Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain belongs to the Beijing family. Strain CCDC5079 is susceptible to isoniazid, rifampicin, streptomycin and ethambutol. This strain is sequenced for comparative genomic studies.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3646
B cell epitopes (IEDB)82
T cell epitopes (IEDB)207
MHC binder (IEDB)342
No. of Vaccine Target127
B cell prediction (LBtope)4019
Prediction of MHC class II binders (Propred)7725
MHC class I prediction (Propred1)35813
CTL epitope prediction (CTLpred)8525
Prediction of Interferon-gamma inducing peptides (IFNepitope)21410
Prediction of IL4 inducing peptides (IL4pred)33779