Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain was isolated in 2004 from a patient with secondary pulmonary tuberculosis. Strain CCDC5180 is resistant to isoniazid, rifampicin, streptomycin and ethambutol.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3590
B cell epitopes (IEDB)79
T cell epitopes (IEDB)206
MHC binder (IEDB)345
No. of Vaccine Target136
B cell prediction (LBtope)4598
Prediction of MHC class II binders (Propred)8528
MHC class I prediction (Propred1)39637
CTL epitope prediction (CTLpred)9355
Prediction of Interferon-gamma inducing peptides (IFNepitope)23924
Prediction of IL4 inducing peptides (IL4pred)37236