Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionThis strain (genotype F11) represents the largest portion of isolates recovered from tuberculosis patients during a TB epidemic in the Western Cape of South Africa. It is also found in other parts of the world.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3941
B cell epitopes (IEDB)95
T cell epitopes (IEDB)229
MHC binder (IEDB)360
No. of Vaccine Target153
B cell prediction (LBtope)5030
Prediction of MHC class II binders (Propred)9165
MHC class I prediction (Propred1)42930
CTL epitope prediction (CTLpred)10110
Prediction of Interferon-gamma inducing peptides (IFNepitope)25908
Prediction of IL4 inducing peptides (IL4pred)40534