Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionGenomic DNA, wild types, parents and mutants provided by John Aquadro at the Broad Institute.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4113
B cell epitopes (IEDB)86
T cell epitopes (IEDB)218
MHC binder (IEDB)333
No. of Vaccine Target147
B cell prediction (LBtope)4805
Prediction of MHC class II binders (Propred)8738
MHC class I prediction (Propred1)40941
CTL epitope prediction (CTLpred)9697
Prediction of Interferon-gamma inducing peptides (IFNepitope)24943
Prediction of IL4 inducing peptides (IL4pred)38404