Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionM. tuberculosis strain KZN 1435 was isolated from a patient in KwaZulu-Natal, South Africa. This strain is multidrug-resistant (resistant to isoniazid and rifampin).
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4059
B cell epitopes (IEDB)95
T cell epitopes (IEDB)233
MHC binder (IEDB)365
No. of Vaccine Target153
B cell prediction (LBtope)5101
Prediction of MHC class II binders (Propred)9346
MHC class I prediction (Propred1)43579
CTL epitope prediction (CTLpred)10264
Prediction of Interferon-gamma inducing peptides (IFNepitope)26396
Prediction of IL4 inducing peptides (IL4pred)41033