Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionMycobacterium tuberculosis KZN V2475 is a clinincal MDR (multi-drug resistant) strain from the KwaZulu-Natal region in South Africa. It is resistant to isoniazid, rifampicin, and streptomycin, but not kanamycin or ofloxacin.
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins4171
B cell epitopes (IEDB)92
T cell epitopes (IEDB)229
MHC binder (IEDB)365
No. of Vaccine Target154
B cell prediction (LBtope)4808
Prediction of MHC class II binders (Propred)9280
MHC class I prediction (Propred1)43025
CTL epitope prediction (CTLpred)10213
Prediction of Interferon-gamma inducing peptides (IFNepitope)25751
Prediction of IL4 inducing peptides (IL4pred)40412