Strain Card

The is the strain card and all its information available in our database. Thhe information includes the result of experiemtnal epitope mapping and prediction from various algorithms. Experimental epitopes were mapped from IEDB repository were B cell, T cell and MHC binders. The prediction tools including B cell epitope (LBtope), MHC class I binding alleles (Propred1), MHC class II binding alleles (Propred), CTL epitope (CTLpred), HLA alleles (nHLApred), interferon-gamma inducing potential (IFNepitope), Interleukin-4 inducing capacity (IL4pred).
DescriptionWhole genome shotgun sequencing of one Colombian clinical isolate of Mycobacterium tuberculosis reveals DosR regulon gene deletions., FEMS Microbiol Lett, 2012 Mar 28;330(2):113-20
CategoryTuberculoid Mycobacteria
Genome visualizationUsing Jbrowse, CGview, Argo applet
Number of proteins3796
B cell epitopes (IEDB)92
T cell epitopes (IEDB)214
MHC binder (IEDB)328
No. of Vaccine Target159
B cell prediction (LBtope)5077
Prediction of MHC class II binders (Propred)9465
MHC class I prediction (Propred1)44077
CTL epitope prediction (CTLpred)10396
Prediction of Interferon-gamma inducing peptides (IFNepitope)26510
Prediction of IL4 inducing peptides (IL4pred)41512