BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-548an MIMAT0019079 Homo sapiens miR-548an 16 6.9
sme-miR-2159-5p MIMAT0011252 Schmidtea mediterranea miR-2159-5p 16 6.9
cfa-miR-8818 MIMAT0034308 Canis familiaris miR-8818 14 27
atr-miR8577 MIMAT0033860 Amborella trichopoda miR8577 14 27
mmu-miR-7092-5p MIMAT0028090 Mus musculus miR-7092-5p 14 27
ppy-miR-4484 MIMAT0024383 Pongo pygmaeus miR-4484 14 27
hsa-miR-4484 MIMAT0019018 Homo sapiens miR-4484 14 27
hsa-miR-3910 MIMAT0018184 Homo sapiens miR-3910 14 27
cin-miR-4000a-2-3p MIMAT0026471 Ciona intestinalis miR-4000a-2-3p 14 27
cin-miR-4000a-3p MIMAT0016431 Ciona intestinalis miR-4000a-3p 14 27
oan-miR-1327-5p MIMAT0006796 Ornithorhynchus anatinus miR-1327-5p 14 27
mmu-miR-511-5p MIMAT0004940 Mus musculus miR-511-5p 14 27
>hsa-miR-548an MIMAT0019079 Homo sapiens miR-548an
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaaaggca 8
||||||||
Sbjct: 1 aaaaggca 8
>sme-miR-2159-5p MIMAT0011252 Schmidtea mediterranea miR-2159-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aaaaggca 8
||||||||
Sbjct: 8 aaaaggca 1
>cfa-miR-8818 MIMAT0034308 Canis familiaris miR-8818
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaaggca 8
|||||||
Sbjct: 7 aaaggca 1
>atr-miR8577 MIMAT0033860 Amborella trichopoda miR8577
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaaaggc 7
|||||||
Sbjct: 1 aaaaggc 7
>mmu-miR-7092-5p MIMAT0028090 Mus musculus miR-7092-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaaggca 8
|||||||
Sbjct: 1 aaaggca 7
>ppy-miR-4484 MIMAT0024383 Pongo pygmaeus miR-4484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaaaggc 7
|||||||
Sbjct: 2 aaaaggc 8
>hsa-miR-4484 MIMAT0019018 Homo sapiens miR-4484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaaaggc 7
|||||||
Sbjct: 1 aaaaggc 7
>hsa-miR-3910 MIMAT0018184 Homo sapiens miR-3910
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaaggca 8
|||||||
Sbjct: 1 aaaggca 7
>cin-miR-4000a-2-3p MIMAT0026471 Ciona intestinalis
miR-4000a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaaaggc 7
|||||||
Sbjct: 7 aaaaggc 1
>cin-miR-4000a-3p MIMAT0016431 Ciona intestinalis miR-4000a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaaaggc 7
|||||||
Sbjct: 7 aaaaggc 1
>oan-miR-1327-5p MIMAT0006796 Ornithorhynchus anatinus
miR-1327-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaaaggc 7
|||||||
Sbjct: 2 aaaaggc 8
>mmu-miR-511-5p MIMAT0004940 Mus musculus miR-511-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaaggca 8
|||||||
Sbjct: 8 aaaggca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 232
Number of extensions: 218
Number of successful extensions: 104
Number of sequences better than 100.0: 12
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
