BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hvt-miR-h15
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon miR7776-3p.1     14      20
mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p         14      20
mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p         14      20
ppe-miR6292 MIMAT0027327 Prunus persica miR6292                        14      20
hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p                14      20
cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p            14      20
aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p              14      20
hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p                  14      20
dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p         14      20
sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p        14      20
mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1            14      20
cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p          14      20
rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus miR-rL1-...    14      20
ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p            14      20
sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p            12      80
eca-miR-8926 MIMAT0034454 Equus caballus miR-8926                      12      80
gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o                 12      80
gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b                 12      80
gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a                 12      80
gra-miR8673 MIMAT0034045 Gossypium raimondii miR8673                   12      80
ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p        12      80
ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p               12      80
prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p         12      80
bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p         12      80
bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon miR5174d-3p       12      80
mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p         12      80
mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p                12      80
mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p                  12      80
osa-miR5487 MIMAT0022120 Oryza sativa miR5487                          12      80
sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388                       12      80
gma-miR5370 MIMAT0021607 Glycine max miR5370                           12      80
gma-miR5042-5p MIMAT0021072 Glycine max miR5042-5p                     12      80
dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster miR-4911-3p       12      80
cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p        12      80
hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b                      12      80
tca-miR-3904-5p MIMAT0018911 Tribolium castaneum miR-3904-5p           12      80
cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p            12      80
cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p            12      80
rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p               12      80
aly-miR852-3p MIMAT0017640 Arabidopsis lyrata miR852-3p                12      80
bmo-miR-3214 MIMAT0015394 Bombyx mori miR-3214                         12      80
hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p                  12      80
bta-miR-2891 MIMAT0013849 Bos taurus miR-2891                          12      80
bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p                   12      80
bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759                         12      80
bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738                         12      80
bta-miR-2424 MIMAT0011993 Bos taurus miR-2424                          12      80
osa-miR2120 MIMAT0011179 Oryza sativa miR2120                          12      80
gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719                       12      80
ath-miR852 MIMAT0004275 Arabidopsis thaliana miR852                    12      80
>bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon
         miR7776-3p.1
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 1 aaagata 7
>mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 1 aaagata 7
>mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>ppe-miR6292 MIMAT0027327 Prunus persica miR6292
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 1 aaagata 7
>cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 2 aaagata 8
>dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 8 aaagata 2
>mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 1 aaagata 7
>rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus
         miR-rL1-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaagata 7
         |||||||
Sbjct: 7 aaagata 1
>sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>eca-miR-8926 MIMAT0034454 Equus caballus miR-8926
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aagata 7
         ||||||
Sbjct: 6 aagata 1
>gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aagata 7
         ||||||
Sbjct: 6 aagata 1
>gra-miR8673 MIMAT0034045 Gossypium raimondii miR8673
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 1 aagata 6
>ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aagata 7
         ||||||
Sbjct: 6 aagata 1
>ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon
         miR5174d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 6 aaagat 1
>mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>osa-miR5487 MIMAT0022120 Oryza sativa miR5487
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 6 aaagat 1
>gma-miR5370 MIMAT0021607 Glycine max miR5370
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>gma-miR5042-5p MIMAT0021072 Glycine max miR5042-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aagata 7
         ||||||
Sbjct: 6 aagata 1
>dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster
         miR-4911-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 6 aaagat 1
>cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 3 aagata 8
>hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>tca-miR-3904-5p MIMAT0018911 Tribolium castaneum miR-3904-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 1 aagata 6
>cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>aly-miR852-3p MIMAT0017640 Arabidopsis lyrata miR852-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 1 aagata 6
>bmo-miR-3214 MIMAT0015394 Bombyx mori miR-3214
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 1 aagata 6
>hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>bta-miR-2891 MIMAT0013849 Bos taurus miR-2891
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 6 aaagat 1
>bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aagata 7
         ||||||
Sbjct: 6 aagata 1
>bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 3 aaagat 8
>bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 6 aaagat 1
>bta-miR-2424 MIMAT0011993 Bos taurus miR-2424
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 8 aaagat 3
>osa-miR2120 MIMAT0011179 Oryza sativa miR2120
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aaagat 6
         ||||||
Sbjct: 1 aaagat 6
>ath-miR852 MIMAT0004275 Arabidopsis thaliana miR852
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagata 7
         ||||||
Sbjct: 1 aagata 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 65
Number of successful extensions: 50
Number of sequences better than 100.0: 50
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)