BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h15
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon miR7776-3p.1 14 20
mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p 14 20
mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p 14 20
ppe-miR6292 MIMAT0027327 Prunus persica miR6292 14 20
hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p 14 20
cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p 14 20
aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p 14 20
hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p 14 20
dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p 14 20
sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p 14 20
mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1 14 20
cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p 14 20
rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus miR-rL1-... 14 20
ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p 14 20
sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p 12 80
eca-miR-8926 MIMAT0034454 Equus caballus miR-8926 12 80
gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o 12 80
gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b 12 80
gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a 12 80
gra-miR8673 MIMAT0034045 Gossypium raimondii miR8673 12 80
ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p 12 80
ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p 12 80
prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p 12 80
bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p 12 80
bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon miR5174d-3p 12 80
mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p 12 80
mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p 12 80
mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p 12 80
osa-miR5487 MIMAT0022120 Oryza sativa miR5487 12 80
sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388 12 80
gma-miR5370 MIMAT0021607 Glycine max miR5370 12 80
gma-miR5042-5p MIMAT0021072 Glycine max miR5042-5p 12 80
dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster miR-4911-3p 12 80
cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p 12 80
hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b 12 80
tca-miR-3904-5p MIMAT0018911 Tribolium castaneum miR-3904-5p 12 80
cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p 12 80
cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p 12 80
rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p 12 80
aly-miR852-3p MIMAT0017640 Arabidopsis lyrata miR852-3p 12 80
bmo-miR-3214 MIMAT0015394 Bombyx mori miR-3214 12 80
hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p 12 80
bta-miR-2891 MIMAT0013849 Bos taurus miR-2891 12 80
bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p 12 80
bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759 12 80
bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738 12 80
bta-miR-2424 MIMAT0011993 Bos taurus miR-2424 12 80
osa-miR2120 MIMAT0011179 Oryza sativa miR2120 12 80
gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719 12 80
ath-miR852 MIMAT0004275 Arabidopsis thaliana miR852 12 80
>bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon
miR7776-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagata 7
|||||||
Sbjct: 1 aaagata 7
>mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagata 7
|||||||
Sbjct: 1 aaagata 7
>mdo-miR-7302-3p MIMAT0028597 Monodelphis domestica miR-7302-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>ppe-miR6292 MIMAT0027327 Prunus persica miR6292
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagata 7
|||||||
Sbjct: 1 aaagata 7
>cin-miR-4083-3p MIMAT0016656 Ciona intestinalis miR-4083-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>aly-miR773b-5p MIMAT0017683 Arabidopsis lyrata miR773b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>hvt-miR-H15-3p MIMAT0012869 Herpesvirus of miR-H15-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagata 7
|||||||
Sbjct: 2 aaagata 8
>dsi-miR-2582a-3p MIMAT0012520 Drosophila simulans miR-2582a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 8 aaagata 2
>mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagata 7
|||||||
Sbjct: 1 aaagata 7
>rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus
miR-rL1-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagata 7
|||||||
Sbjct: 7 aaagata 1
>sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>eca-miR-8926 MIMAT0034454 Equus caballus miR-8926
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>gra-miR8742b MIMAT0034159 Gossypium raimondii miR8742b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagata 7
||||||
Sbjct: 6 aagata 1
>gra-miR8742a MIMAT0034158 Gossypium raimondii miR8742a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagata 7
||||||
Sbjct: 6 aagata 1
>gra-miR8673 MIMAT0034045 Gossypium raimondii miR8673
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 1 aagata 6
>ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagata 7
||||||
Sbjct: 6 aagata 1
>ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon
miR5174d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 6 aaagat 1
>mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>osa-miR5487 MIMAT0022120 Oryza sativa miR5487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 6 aaagat 1
>gma-miR5370 MIMAT0021607 Glycine max miR5370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>gma-miR5042-5p MIMAT0021072 Glycine max miR5042-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagata 7
||||||
Sbjct: 6 aagata 1
>dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster
miR-4911-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 6 aaagat 1
>cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 3 aagata 8
>hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>tca-miR-3904-5p MIMAT0018911 Tribolium castaneum miR-3904-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 1 aagata 6
>cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>aly-miR852-3p MIMAT0017640 Arabidopsis lyrata miR852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 1 aagata 6
>bmo-miR-3214 MIMAT0015394 Bombyx mori miR-3214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 1 aagata 6
>hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>bta-miR-2891 MIMAT0013849 Bos taurus miR-2891
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 6 aaagat 1
>bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagata 7
||||||
Sbjct: 6 aagata 1
>bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 3 aaagat 8
>bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 6 aaagat 1
>bta-miR-2424 MIMAT0011993 Bos taurus miR-2424
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaagat 6
||||||
Sbjct: 8 aaagat 3
>osa-miR2120 MIMAT0011179 Oryza sativa miR2120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaagat 6
||||||
Sbjct: 1 aaagat 6
>ath-miR852 MIMAT0004275 Arabidopsis thaliana miR852
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagata 7
||||||
Sbjct: 1 aagata 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 79
Number of extensions: 65
Number of successful extensions: 50
Number of sequences better than 100.0: 50
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)