BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h7
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p 16 6.9
hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p 16 6.9
ssa-miR-130d-3-5p MIMAT0032330 Salmo salar miR-130d-3-5p 14 27
ssa-miR-130b-5p MIMAT0032324 Salmo salar miR-130b-5p 14 27
mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p 14 27
mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p 14 27
cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107 14 27
hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p 14 27
hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a 14 27
mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259 14 27
hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936 14 27
oan-miR-1398-5p MIMAT0007201 Ornithorhynchus anatinus miR-1398-5p 14 27
>hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaaggggt 8
||||||||
Sbjct: 1 aaaggggt 8
>hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaaggggt 8
||||||||
Sbjct: 1 aaaggggt 8
>ssa-miR-130d-3-5p MIMAT0032330 Salmo salar miR-130d-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagggg 7
|||||||
Sbjct: 8 aaagggg 2
>ssa-miR-130b-5p MIMAT0032324 Salmo salar miR-130b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagggg 7
|||||||
Sbjct: 8 aaagggg 2
>mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggggt 8
|||||||
Sbjct: 1 aaggggt 7
>mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagggg 7
|||||||
Sbjct: 8 aaagggg 2
>cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagggg 7
|||||||
Sbjct: 1 aaagggg 7
>hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaggggt 8
|||||||
Sbjct: 8 aaggggt 2
>hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaggggt 8
|||||||
Sbjct: 8 aaggggt 2
>mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggggt 8
|||||||
Sbjct: 2 aaggggt 8
>hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaggggt 8
|||||||
Sbjct: 2 aaggggt 8
>oan-miR-1398-5p MIMAT0007201 Ornithorhynchus anatinus
miR-1398-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagggg 7
|||||||
Sbjct: 7 aaagggg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 181
Number of extensions: 167
Number of successful extensions: 138
Number of sequences better than 100.0: 12
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
