BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ttv-yonKC197-t1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-224-5p MIMAT0036073 Capra hircus miR-224-5p 14 27
tae-miR9671-5p MIMAT0035787 Triticum aestivum miR9671-5p 14 27
ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p 14 27
stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012 14 27
hsa-miR-6820-3p MIMAT0027541 Homo sapiens miR-6820-3p 14 27
rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325 14 27
cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p 14 27
hsa-miR-3164 MIMAT0015038 Homo sapiens miR-3164 14 27
eca-miR-224 MIMAT0013206 Equus caballus miR-224 14 27
bta-miR-224 MIMAT0009271 Bos taurus miR-224 14 27
dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p 14 27
dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284 14 27
dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284 14 27
cfa-miR-224 MIMAT0006744 Canis familiaris miR-224 14 27
ath-miR864-3p MIMAT0004312 Arabidopsis thaliana miR864-3p 14 27
rno-miR-224-5p MIMAT0003119 Rattus norvegicus miR-224-5p 14 27
ppa-miR-224 MIMAT0002599 Pan paniscus miR-224 14 27
mne-miR-224 MIMAT0002598 Macaca nemestrina miR-224 14 27
ppy-miR-224 MIMAT0002597 Pongo pygmaeus miR-224 14 27
ggo-miR-224 MIMAT0002596 Gorilla gorilla miR-224 14 27
ptr-miR-224 MIMAT0002595 Pan troglodytes miR-224 14 27
mml-miR-224-5p MIMAT0002594 Macaca mulatta miR-224-5p 14 27
ssc-miR-224 MIMAT0002132 Sus scrofa miR-224 14 27
mmu-miR-224-5p MIMAT0000671 Mus musculus miR-224-5p 14 27
hsa-miR-224-5p MIMAT0000281 Homo sapiens miR-224-5p 14 27
>chi-miR-224-5p MIMAT0036073 Capra hircus miR-224-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>tae-miR9671-5p MIMAT0035787 Triticum aestivum miR9671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagtca 7
|||||||
Sbjct: 7 aaagtca 1
>ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagtca 7
|||||||
Sbjct: 8 aaagtca 2
>stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagtca 7
|||||||
Sbjct: 8 aaagtca 2
>hsa-miR-6820-3p MIMAT0027541 Homo sapiens miR-6820-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcac 8
|||||||
Sbjct: 8 aagtcac 2
>rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagtca 7
|||||||
Sbjct: 1 aaagtca 7
>cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaagtca 7
|||||||
Sbjct: 8 aaagtca 2
>hsa-miR-3164 MIMAT0015038 Homo sapiens miR-3164
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagtcac 8
|||||||
Sbjct: 8 aagtcac 2
>eca-miR-224 MIMAT0013206 Equus caballus miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>bta-miR-224 MIMAT0009271 Bos taurus miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagtca 7
|||||||
Sbjct: 2 aaagtca 8
>dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagtca 7
|||||||
Sbjct: 2 aaagtca 8
>dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagtca 7
|||||||
Sbjct: 2 aaagtca 8
>cfa-miR-224 MIMAT0006744 Canis familiaris miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ath-miR864-3p MIMAT0004312 Arabidopsis thaliana miR864-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaagtca 7
|||||||
Sbjct: 2 aaagtca 8
>rno-miR-224-5p MIMAT0003119 Rattus norvegicus miR-224-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ppa-miR-224 MIMAT0002599 Pan paniscus miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>mne-miR-224 MIMAT0002598 Macaca nemestrina miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ppy-miR-224 MIMAT0002597 Pongo pygmaeus miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ggo-miR-224 MIMAT0002596 Gorilla gorilla miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ptr-miR-224 MIMAT0002595 Pan troglodytes miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>mml-miR-224-5p MIMAT0002594 Macaca mulatta miR-224-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>ssc-miR-224 MIMAT0002132 Sus scrofa miR-224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>mmu-miR-224-5p MIMAT0000671 Mus musculus miR-224-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
>hsa-miR-224-5p MIMAT0000281 Homo sapiens miR-224-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagtcac 8
|||||||
Sbjct: 2 aagtcac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 163
Number of extensions: 138
Number of successful extensions: 117
Number of sequences better than 100.0: 25
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)