BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b 14 27
bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p 14 27
hbr-miR6484 MIMAT0025293 Hevea brasiliensis miR6484 14 27
hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118 14 27
osa-miR5076 MIMAT0020564 Oryza sativa miR5076 14 27
pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p 14 27
hsa-miR-4506 MIMAT0019042 Homo sapiens miR-4506 14 27
bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p 14 27
>hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgggc 8
|||||||
Sbjct: 2 aatgggc 8
>bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaatggg 7
|||||||
Sbjct: 7 aaatggg 1
>hbr-miR6484 MIMAT0025293 Hevea brasiliensis miR6484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgggc 8
|||||||
Sbjct: 2 aatgggc 8
>hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaatggg 7
|||||||
Sbjct: 2 aaatggg 8
>osa-miR5076 MIMAT0020564 Oryza sativa miR5076
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaatggg 7
|||||||
Sbjct: 2 aaatggg 8
>pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgggc 8
|||||||
Sbjct: 8 aatgggc 2
>hsa-miR-4506 MIMAT0019042 Homo sapiens miR-4506
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaatggg 7
|||||||
Sbjct: 1 aaatggg 7
>bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaatggg 7
|||||||
Sbjct: 7 aaatggg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 100
Number of extensions: 92
Number of successful extensions: 63
Number of sequences better than 100.0: 8
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
