BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR190
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-929-5p MIMAT0035572 Drosophila virilis miR-929-5p 14 20
bdi-miR7755-3p MIMAT0030253 Brachypodium distachyon miR7755-3p 14 20
hme-miR-929 MIMAT0024992 Heliconius melpomene miR-929 14 20
api-miR-929 MIMAT0014741 Acyrthosiphon pisum miR-929 14 20
dsi-miR-929-5p MIMAT0012459 Drosophila simulans miR-929-5p 14 20
dps-miR-929-5p MIMAT0012267 Drosophila pseudoobscura miR-929-5p 14 20
dme-miR-929-5p MIMAT0020892 Drosophila melanogaster miR-929-5p 14 20
oha-miR-32-3p MIMAT0036900 Ophiophagus hannah miR-32-3p 12 80
dvi-miR-932-5p MIMAT0035573 Drosophila virilis miR-932-5p 12 80
pxy-miR-8499b MIMAT0033710 Plutella xylostella miR-8499b 12 80
ppc-miR-8363-5p MIMAT0033292 Pristionchus pacificus miR-8363-5p 12 80
ppe-miR6288b-3p MIMAT0031561 Prunus persica miR6288b-3p 12 80
stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p 12 80
stu-miR7984d-3p MIMAT0031204 Solanum tuberosum miR7984d-3p 12 80
hhi-miR-7796 MIMAT0030343 Hippoglossus hippoglossus miR-7796 12 80
bdi-miR5174c-3p MIMAT0030104 Brachypodium distachyon miR5174c-3p 12 80
cbn-miR-7622 MIMAT0029662 Caenorhabditis brenneri miR-7622 12 80
bma-miR-5868 MIMAT0026367 Brugia malayi miR-5868 12 80
gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p 12 80
hme-miR-932 MIMAT0024995 Heliconius melpomene miR-932 12 80
nta-miR6025c MIMAT0024730 Nicotiana tabacum miR6025c 12 80
pgi-miR6135j MIMAT0027251 Panax ginseng miR6135j 12 80
pgi-miR6135e.2-5p MIMAT0027246 Panax ginseng miR6135e.2-5p 12 80
mse-miR-932 MIMAT0024454 Manduca sexta miR-932 12 80
cgr-miR-32-3p MIMAT0023905 Cricetulus griseus miR-32-3p 12 80
cel-miR-5551-3p MIMAT0022194 Caenorhabditis elegans miR-5551-3p 12 80
aca-miR-32-3p MIMAT0021933 Anolis carolinensis miR-32-3p 12 80
nlo-miR-932 MIMAT0018440 Nasonia longicornis miR-932 12 80
ngi-miR-932 MIMAT0018404 Nasonia giraulti miR-932 12 80
tca-miR-3814-5p MIMAT0018652 Tribolium castaneum miR-3814-5p 12 80
vvi-miR3626-3p MIMAT0018016 Vitis vinifera miR3626-3p 12 80
cin-miR-4132-3p MIMAT0016729 Ciona intestinalis miR-4132-3p 12 80
nvi-miR-932 MIMAT0015702 Nasonia vitripennis miR-932 12 80
ath-miR841b-3p MIMAT0017742 Arabidopsis thaliana miR841b-3p 12 80
aly-miR3435-3p MIMAT0017702 Arabidopsis lyrata miR3435-3p 12 80
aly-miR845b-5p MIMAT0017633 Arabidopsis lyrata miR845b-5p 12 80
bmo-miR-3247 MIMAT0015429 Bombyx mori miR-3247 12 80
cqu-miR-932-5p MIMAT0014414 Culex quinquefasciatus miR-932-5p 12 80
aae-miR-932-5p MIMAT0014269 Aedes aegypti miR-932-5p 12 80
mtr-miR2678 MIMAT0013506 Medicago truncatula miR2678 12 80
dsi-miR-932-5p MIMAT0012477 Drosophila simulans miR-932-5p 12 80
dps-miR-932-5p MIMAT0012259 Drosophila pseudoobscura miR-932-5p 12 80
bta-miR-2473 MIMAT0012064 Bos taurus miR-2473 12 80
cel-miR-2220-3p MIMAT0011462 Caenorhabditis elegans miR-2220-3p 12 80
bmo-miR-932 MIMAT0009160 Bombyx mori miR-932 12 80
tca-miR-929-5p MIMAT0008395 Tribolium castaneum miR-929-5p 12 80
tca-miR-932-5p MIMAT0008392 Tribolium castaneum miR-932-5p 12 80
osa-miR1854-3p MIMAT0007776 Oryza sativa miR1854-3p 12 80
oan-miR-1420g-3p MIMAT0007319 Ornithorhynchus anatinus miR-1420g-3p 12 80
oan-miR-32-3p MIMAT0007269 Ornithorhynchus anatinus miR-32-3p 12 80
oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384 12 80
oan-miR-1420d-3p MIMAT0006928 Ornithorhynchus anatinus miR-1420d-3p 12 80
dme-miR-932-5p MIMAT0005479 Drosophila melanogaster miR-932-5p 12 80
ame-miR-932 MIMAT0004444 Apis mellifera miR-932 12 80
cel-miR-789-2-5p MIMAT0032017 Caenorhabditis elegans miR-789-2-5p 12 80
cel-miR-789-5p MIMAT0032016 Caenorhabditis elegans miR-789-5p 12 80
mmu-miR-32-3p MIMAT0017050 Mus musculus miR-32-3p 12 80
hsa-miR-32-3p MIMAT0004505 Homo sapiens miR-32-3p 12 80
>dvi-miR-929-5p MIMAT0035572 Drosophila virilis miR-929-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>bdi-miR7755-3p MIMAT0030253 Brachypodium distachyon miR7755-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaattga 7
|||||||
Sbjct: 7 aaattga 1
>hme-miR-929 MIMAT0024992 Heliconius melpomene miR-929
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>api-miR-929 MIMAT0014741 Acyrthosiphon pisum miR-929
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>dsi-miR-929-5p MIMAT0012459 Drosophila simulans miR-929-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>dps-miR-929-5p MIMAT0012267 Drosophila pseudoobscura miR-929-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>dme-miR-929-5p MIMAT0020892 Drosophila melanogaster miR-929-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaattga 7
|||||||
Sbjct: 1 aaattga 7
>oha-miR-32-3p MIMAT0036900 Ophiophagus hannah miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>dvi-miR-932-5p MIMAT0035573 Drosophila virilis miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>pxy-miR-8499b MIMAT0033710 Plutella xylostella miR-8499b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>ppc-miR-8363-5p MIMAT0033292 Pristionchus pacificus miR-8363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 3 aaattg 8
>ppe-miR6288b-3p MIMAT0031561 Prunus persica miR6288b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>stu-miR7984d-3p MIMAT0031204 Solanum tuberosum miR7984d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>hhi-miR-7796 MIMAT0030343 Hippoglossus hippoglossus miR-7796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 3 aattga 8
>bdi-miR5174c-3p MIMAT0030104 Brachypodium distachyon
miR5174c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>cbn-miR-7622 MIMAT0029662 Caenorhabditis brenneri miR-7622
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>bma-miR-5868 MIMAT0026367 Brugia malayi miR-5868
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 3 aattga 8
>hme-miR-932 MIMAT0024995 Heliconius melpomene miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>nta-miR6025c MIMAT0024730 Nicotiana tabacum miR6025c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 3 aattga 8
>pgi-miR6135j MIMAT0027251 Panax ginseng miR6135j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>pgi-miR6135e.2-5p MIMAT0027246 Panax ginseng miR6135e.2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>mse-miR-932 MIMAT0024454 Manduca sexta miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>cgr-miR-32-3p MIMAT0023905 Cricetulus griseus miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>cel-miR-5551-3p MIMAT0022194 Caenorhabditis elegans miR-5551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 8 aaattg 3
>aca-miR-32-3p MIMAT0021933 Anolis carolinensis miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>nlo-miR-932 MIMAT0018440 Nasonia longicornis miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>ngi-miR-932 MIMAT0018404 Nasonia giraulti miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>tca-miR-3814-5p MIMAT0018652 Tribolium castaneum miR-3814-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 8 aaattg 3
>vvi-miR3626-3p MIMAT0018016 Vitis vinifera miR3626-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 8 aattga 3
>cin-miR-4132-3p MIMAT0016729 Ciona intestinalis miR-4132-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 1 aaattg 6
>nvi-miR-932 MIMAT0015702 Nasonia vitripennis miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>ath-miR841b-3p MIMAT0017742 Arabidopsis thaliana miR841b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>aly-miR3435-3p MIMAT0017702 Arabidopsis lyrata miR3435-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>aly-miR845b-5p MIMAT0017633 Arabidopsis lyrata miR845b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>bmo-miR-3247 MIMAT0015429 Bombyx mori miR-3247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 3 aaattg 8
>cqu-miR-932-5p MIMAT0014414 Culex quinquefasciatus miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>aae-miR-932-5p MIMAT0014269 Aedes aegypti miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>mtr-miR2678 MIMAT0013506 Medicago truncatula miR2678
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 3 aaattg 8
>dsi-miR-932-5p MIMAT0012477 Drosophila simulans miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>dps-miR-932-5p MIMAT0012259 Drosophila pseudoobscura miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>bta-miR-2473 MIMAT0012064 Bos taurus miR-2473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 1 aaattg 6
>cel-miR-2220-3p MIMAT0011462 Caenorhabditis elegans miR-2220-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>bmo-miR-932 MIMAT0009160 Bombyx mori miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>tca-miR-929-5p MIMAT0008395 Tribolium castaneum miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>tca-miR-932-5p MIMAT0008392 Tribolium castaneum miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>osa-miR1854-3p MIMAT0007776 Oryza sativa miR1854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 8 aaattg 3
>oan-miR-1420g-3p MIMAT0007319 Ornithorhynchus anatinus
miR-1420g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 1 aaattg 6
>oan-miR-32-3p MIMAT0007269 Ornithorhynchus anatinus miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 8 aaattg 3
>oan-miR-1420d-3p MIMAT0006928 Ornithorhynchus anatinus
miR-1420d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaattg 6
||||||
Sbjct: 1 aaattg 6
>dme-miR-932-5p MIMAT0005479 Drosophila melanogaster miR-932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>ame-miR-932 MIMAT0004444 Apis mellifera miR-932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aattga 7
||||||
Sbjct: 6 aattga 1
>cel-miR-789-2-5p MIMAT0032017 Caenorhabditis elegans
miR-789-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>cel-miR-789-5p MIMAT0032016 Caenorhabditis elegans miR-789-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aattga 7
||||||
Sbjct: 1 aattga 6
>mmu-miR-32-3p MIMAT0017050 Mus musculus miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
>hsa-miR-32-3p MIMAT0004505 Homo sapiens miR-32-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaattg 6
||||||
Sbjct: 6 aaattg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 86
Number of extensions: 79
Number of successful extensions: 59
Number of sequences better than 100.0: 58
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
