BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR5168-5p MIMAT0037130 Aegilops tauschii miR5168-5p 14 20
eca-miR-9006 MIMAT0034546 Equus caballus miR-9006 14 20
bma-miR-5847 MIMAT0026345 Brugia malayi miR-5847 14 20
mtr-miR5277 MIMAT0021316 Medicago truncatula miR5277 14 20
cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p 14 20
bta-miR-2325c MIMAT0011934 Bos taurus miR-2325c 14 20
bta-miR-2325b MIMAT0011927 Bos taurus miR-2325b 14 20
gga-miR-1814 MIMAT0007513 Gallus gallus miR-1814 14 20
oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p 12 80
bra-miR9567-5p MIMAT0035693 Brassica rapa miR9567-5p 12 80
gsa-miR-67-3p MIMAT0035263 Gyrodactylus salaris miR-67-3p 12 80
sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p 12 80
ppc-miR-8335-3p MIMAT0033215 Pristionchus pacificus miR-8335-3p 12 80
ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p 12 80
ssa-miR-338a-4-5p MIMAT0032617 Salmo salar miR-338a-4-5p 12 80
bma-miR-307 MIMAT0031748 Brugia malayi miR-307 12 80
bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p 12 80
prd-miR-67-3p MIMAT0030755 Panagrellus redivivus miR-67-3p 12 80
bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p 12 80
cbn-miR-67 MIMAT0029775 Caenorhabditis brenneri miR-67 12 80
mdo-miR-7248-3p MIMAT0028463 Monodelphis domestica miR-7248-3p 12 80
gga-miR-6568-3p MIMAT0025644 Gallus gallus miR-6568-3p 12 80
gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p 12 80
hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327 12 80
mse-miR-307 MIMAT0024448 Manduca sexta miR-307 12 80
hco-miR-307 MIMAT0023407 Haemonchus contortus miR-307 12 80
ola-miR-338-5p MIMAT0022579 Oryzias latipes miR-338-5p 12 80
tur-miR-307-3p MIMAT0023069 Tetranychus urticae miR-307-3p 12 80
asu-miR-67-3p MIMAT0021524 Ascaris suum miR-67-3p 12 80
hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p 12 80
pma-miR-10b-3p MIMAT0019377 Petromyzon marinus miR-10b-3p 12 80
mmu-miR-3970 MIMAT0019355 Mus musculus miR-3970 12 80
gma-miR1520p MIMAT0018322 Glycine max miR1520p 12 80
tca-miR-3887-5p MIMAT0018872 Tribolium castaneum miR-3887-5p 12 80
ame-miR-307 MIMAT0018509 Apis mellifera miR-307 12 80
ssc-miR-652 MIMAT0017964 Sus scrofa miR-652 12 80
ssc-miR-382 MIMAT0017956 Sus scrofa miR-382 12 80
cin-miR-4101-3p MIMAT0016686 Ciona intestinalis miR-4101-3p 12 80
sja-miR-307 MIMAT0016270 Schistosoma japonicum miR-307 12 80
nvi-miR-307 MIMAT0015694 Nasonia vitripennis miR-307 12 80
aly-miR822-3p MIMAT0017600 Arabidopsis lyrata miR822-3p 12 80
bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p 12 80
api-miR-307 MIMAT0014729 Acyrthosiphon pisum miR-307 12 80
tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p 12 80
isc-miR-307 MIMAT0012701 Ixodes scapularis miR-307 12 80
dpu-miR-307 MIMAT0012665 Daphnia pulex miR-307 12 80
bta-miR-2304 MIMAT0011816 Bos taurus miR-2304 12 80
ppc-miR-67 MIMAT0011713 Pristionchus pacificus miR-67 12 80
crm-miR-67-3p MIMAT0011596 Caenorhabditis remanei miR-67-3p 12 80
sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p 12 80
sme-miR-2168-3p MIMAT0012160 Schmidtea mediterranea miR-2168-3p 12 80
lmi-miR-307-3p MIMAT0010137 Locusta migratoria miR-307-3p 12 80
bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p 12 80
cte-miR-67 MIMAT0009675 Capitella teleta miR-67 12 80
lgi-miR-67 MIMAT0009570 Lottia gigantea miR-67 12 80
dya-miR-307 MIMAT0009054 Drosophila yakuba miR-307 12 80
dwi-miR-307 MIMAT0009031 Drosophila willistoni miR-307 12 80
dvi-miR-307 MIMAT0008953 Drosophila virilis miR-307 12 80
dsi-miR-307 MIMAT0008884 Drosophila simulans miR-307 12 80
dse-miR-307 MIMAT0008811 Drosophila sechellia miR-307 12 80
dpe-miR-307 MIMAT0008697 Drosophila persimilis miR-307 12 80
dmo-miR-307 MIMAT0008665 Drosophila mojavensis miR-307 12 80
dgr-miR-307 MIMAT0008562 Drosophila grimshawi miR-307 12 80
der-miR-307 MIMAT0008497 Drosophila erecta miR-307 12 80
dan-miR-307 MIMAT0008434 Drosophila ananassae miR-307 12 80
tca-miR-307-3p MIMAT0008389 Tribolium castaneum miR-307-3p 12 80
gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p 12 80
rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p 12 80
rno-miR-196c-3p MIMAT0017299 Rattus norvegicus miR-196c-3p 12 80
ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074 12 80
sme-miR-67-3p MIMAT0004014 Schmidtea mediterranea miR-67-3p 12 80
bmo-miR-307-3p MIMAT0004208 Bombyx mori miR-307-3p 12 80
mmu-miR-374b-3p MIMAT0003728 Mus musculus miR-374b-3p 12 80
aga-miR-307 MIMAT0001519 Anopheles gambiae miR-307 12 80
dps-miR-307a MIMAT0001257 Drosophila pseudoobscura miR-307a 12 80
cbr-miR-67 MIMAT0000480 Caenorhabditis briggsae miR-67 12 80
dme-miR-307a-3p MIMAT0000398 Drosophila melanogaster miR-307a-3p 12 80
cel-miR-67-3p MIMAT0000039 Caenorhabditis elegans miR-67-3p 12 80
>ata-miR5168-5p MIMAT0037130 Aegilops tauschii miR5168-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 8 aacaacc 2
>eca-miR-9006 MIMAT0034546 Equus caballus miR-9006
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 7 aacaacc 1
>bma-miR-5847 MIMAT0026345 Brugia malayi miR-5847
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacaacc 7
|||||||
Sbjct: 1 aacaacc 7
>mtr-miR5277 MIMAT0021316 Medicago truncatula miR5277
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 8 aacaacc 2
>cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacaacc 7
|||||||
Sbjct: 1 aacaacc 7
>bta-miR-2325c MIMAT0011934 Bos taurus miR-2325c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 7 aacaacc 1
>bta-miR-2325b MIMAT0011927 Bos taurus miR-2325b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 8 aacaacc 2
>gga-miR-1814 MIMAT0007513 Gallus gallus miR-1814
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacaacc 7
|||||||
Sbjct: 8 aacaacc 2
>oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>bra-miR9567-5p MIMAT0035693 Brassica rapa miR9567-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 3 aacaac 8
>gsa-miR-67-3p MIMAT0035263 Gyrodactylus salaris miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 3 aacaac 8
>ppc-miR-8335-3p MIMAT0033215 Pristionchus pacificus miR-8335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacaac 6
||||||
Sbjct: 6 aacaac 1
>ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>ssa-miR-338a-4-5p MIMAT0032617 Salmo salar miR-338a-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>bma-miR-307 MIMAT0031748 Brugia malayi miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>prd-miR-67-3p MIMAT0030755 Panagrellus redivivus miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacaac 6
||||||
Sbjct: 8 aacaac 3
>cbn-miR-67 MIMAT0029775 Caenorhabditis brenneri miR-67
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>mdo-miR-7248-3p MIMAT0028463 Monodelphis domestica miR-7248-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 1 acaacc 6
>gga-miR-6568-3p MIMAT0025644 Gallus gallus miR-6568-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 1 acaacc 6
>gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>mse-miR-307 MIMAT0024448 Manduca sexta miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>hco-miR-307 MIMAT0023407 Haemonchus contortus miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>ola-miR-338-5p MIMAT0022579 Oryzias latipes miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>tur-miR-307-3p MIMAT0023069 Tetranychus urticae miR-307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>asu-miR-67-3p MIMAT0021524 Ascaris suum miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>pma-miR-10b-3p MIMAT0019377 Petromyzon marinus miR-10b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>mmu-miR-3970 MIMAT0019355 Mus musculus miR-3970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>gma-miR1520p MIMAT0018322 Glycine max miR1520p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacaac 6
||||||
Sbjct: 8 aacaac 3
>tca-miR-3887-5p MIMAT0018872 Tribolium castaneum miR-3887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>ame-miR-307 MIMAT0018509 Apis mellifera miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>ssc-miR-652 MIMAT0017964 Sus scrofa miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 1 acaacc 6
>ssc-miR-382 MIMAT0017956 Sus scrofa miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacaac 6
||||||
Sbjct: 8 aacaac 3
>cin-miR-4101-3p MIMAT0016686 Ciona intestinalis miR-4101-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>sja-miR-307 MIMAT0016270 Schistosoma japonicum miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>nvi-miR-307 MIMAT0015694 Nasonia vitripennis miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>aly-miR822-3p MIMAT0017600 Arabidopsis lyrata miR822-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 3 aacaac 8
>bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>api-miR-307 MIMAT0014729 Acyrthosiphon pisum miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>isc-miR-307 MIMAT0012701 Ixodes scapularis miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dpu-miR-307 MIMAT0012665 Daphnia pulex miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>bta-miR-2304 MIMAT0011816 Bos taurus miR-2304
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 6 acaacc 1
>ppc-miR-67 MIMAT0011713 Pristionchus pacificus miR-67
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>crm-miR-67-3p MIMAT0011596 Caenorhabditis remanei miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>sme-miR-2168-3p MIMAT0012160 Schmidtea mediterranea miR-2168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>lmi-miR-307-3p MIMAT0010137 Locusta migratoria miR-307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 1 aacaac 6
>cte-miR-67 MIMAT0009675 Capitella teleta miR-67
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>lgi-miR-67 MIMAT0009570 Lottia gigantea miR-67
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dya-miR-307 MIMAT0009054 Drosophila yakuba miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dwi-miR-307 MIMAT0009031 Drosophila willistoni miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dvi-miR-307 MIMAT0008953 Drosophila virilis miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dsi-miR-307 MIMAT0008884 Drosophila simulans miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dse-miR-307 MIMAT0008811 Drosophila sechellia miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dpe-miR-307 MIMAT0008697 Drosophila persimilis miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dmo-miR-307 MIMAT0008665 Drosophila mojavensis miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dgr-miR-307 MIMAT0008562 Drosophila grimshawi miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>der-miR-307 MIMAT0008497 Drosophila erecta miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dan-miR-307 MIMAT0008434 Drosophila ananassae miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>tca-miR-307-3p MIMAT0008389 Tribolium castaneum miR-307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacaac 6
||||||
Sbjct: 8 aacaac 3
>rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 1 acaacc 6
>rno-miR-196c-3p MIMAT0017299 Rattus norvegicus miR-196c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacaac 6
||||||
Sbjct: 3 aacaac 8
>ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 8 acaacc 3
>sme-miR-67-3p MIMAT0004014 Schmidtea mediterranea miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>bmo-miR-307-3p MIMAT0004208 Bombyx mori miR-307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>mmu-miR-374b-3p MIMAT0003728 Mus musculus miR-374b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaacc 7
||||||
Sbjct: 6 acaacc 1
>aga-miR-307 MIMAT0001519 Anopheles gambiae miR-307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dps-miR-307a MIMAT0001257 Drosophila pseudoobscura miR-307a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>cbr-miR-67 MIMAT0000480 Caenorhabditis briggsae miR-67
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>dme-miR-307a-3p MIMAT0000398 Drosophila melanogaster
miR-307a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
>cel-miR-67-3p MIMAT0000039 Caenorhabditis elegans miR-67-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaacc 7
||||||
Sbjct: 3 acaacc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 119
Number of successful extensions: 78
Number of sequences better than 100.0: 78
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 78
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)