BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m30
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p 14 20
hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b 14 20
hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659 14 20
cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p 14 20
ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609 14 20
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p 14 20
ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p 12 80
oha-miR-122-5p MIMAT0036666 Ophiophagus hannah miR-122-5p 12 80
tch-miR-122-5p MIMAT0036530 Tupaia chinensis miR-122-5p 12 80
tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142 12 80
gma-miR9746i MIMAT0036383 Glycine max miR9746i 12 80
gma-miR9746h MIMAT0036373 Glycine max miR9746h 12 80
gma-miR9746g MIMAT0036372 Glycine max miR9746g 12 80
gma-miR9746f MIMAT0036371 Glycine max miR9746f 12 80
gma-miR9746e MIMAT0036370 Glycine max miR9746e 12 80
gma-miR9746d MIMAT0036369 Glycine max miR9746d 12 80
gma-miR9746c MIMAT0036368 Glycine max miR9746c 12 80
gma-miR9746b MIMAT0036367 Glycine max miR9746b 12 80
gma-miR9746a MIMAT0036366 Glycine max miR9746a 12 80
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 12 80
chi-miR-122 MIMAT0035918 Capra hircus miR-122 12 80
eca-miR-9158 MIMAT0034735 Equus caballus miR-9158 12 80
eca-miR-9004 MIMAT0034544 Equus caballus miR-9004 12 80
sma-miR-8410-3p MIMAT0033525 Schistosoma mansoni miR-8410-3p 12 80
ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus miR-8364j-3p 12 80
cel-miR-8194-3p MIMAT0032802 Caenorhabditis elegans miR-8194-3p 12 80
ssa-miR-142a-3p MIMAT0032362 Salmo salar miR-142a-3p 12 80
ssa-miR-122-5p MIMAT0032301 Salmo salar miR-122-5p 12 80
bbe-miR-124-5p MIMAT0031577 Branchiostoma belcheri miR-124-5p 12 80
stu-miR398b-5p MIMAT0031333 Solanum tuberosum miR398b-5p 12 80
prd-miR-7937-3p MIMAT0030733 Panagrellus redivivus miR-7937-3p 12 80
oar-miR-200a MIMAT0030042 Ovis aries miR-200a 12 80
cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630 12 80
ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142 12 80
ipu-miR-122 MIMAT0029395 Ictalurus punctatus miR-122 12 80
gga-miR-7444-3p MIMAT0029043 Gallus gallus miR-7444-3p 12 80
mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica miR-1545b-5p 12 80
mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica miR-199b-3-5p 12 80
mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica miR-199b-2-5p 12 80
mmu-miR-7228-3p MIMAT0028425 Mus musculus miR-7228-3p 12 80
mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p 12 80
ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p 12 80
ccr-miR-122 MIMAT0026203 Cyprinus carpio miR-122 12 80
mmu-miR-6923-3p MIMAT0027747 Mus musculus miR-6923-3p 12 80
mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p 12 80
hsa-miR-6790-5p MIMAT0027480 Homo sapiens miR-6790-5p 12 80
hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p 12 80
gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p 12 80
pol-miR-122-5p MIMAT0025428 Paralichthys olivaceus miR-122-5p 12 80
mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401 12 80
hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182 12 80
nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i 12 80
nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h 12 80
nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g 12 80
nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f 12 80
bta-miR-574 MIMAT0024577 Bos taurus miR-574 12 80
ggo-miR-122 MIMAT0024179 Gorilla gorilla miR-122 12 80
cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p 12 80
cgr-miR-122 MIMAT0023739 Cricetulus griseus miR-122 12 80
ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a 12 80
aca-miR-122-5p MIMAT0021723 Anolis carolinensis miR-122-5p 12 80
hsa-miR-4658 MIMAT0019725 Homo sapiens miR-4658 12 80
gma-miR4379 MIMAT0018285 Glycine max miR4379 12 80
dme-miR-3641-5p MIMAT0018055 Drosophila melanogaster miR-3641-5p 12 80
hsa-miR-4280 MIMAT0016911 Homo sapiens miR-4280 12 80
cin-miR-4139-3p MIMAT0016737 Ciona intestinalis miR-4139-3p 12 80
rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587 12 80
ppy-miR-122 MIMAT0015746 Pongo pygmaeus miR-122 12 80
tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p 12 80
tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p 12 80
tgu-miR-122-5p MIMAT0014529 Taeniopygia guttata miR-122-5p 12 80
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 12 80
eca-miR-122 MIMAT0012995 Equus caballus miR-122 12 80
dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975 12 80
dps-miR-2555-5p MIMAT0012372 Drosophila pseudoobscura miR-2555-5p 12 80
cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans miR-2209c-5p 12 80
cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans miR-2209a-5p 12 80
ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p 12 80
cfa-miR-141 MIMAT0009876 Canis familiaris miR-141 12 80
sko-miR-124-5p MIMAT0009624 Saccoglossus kowalevskii miR-124-5p 12 80
bfl-miR-124-5p MIMAT0019146 Branchiostoma floridae miR-124-5p 12 80
tca-miR-124-5p MIMAT0019114 Tribolium castaneum miR-124-5p 12 80
ptr-miR-122 MIMAT0007963 Pan troglodytes miR-122 12 80
cfa-miR-122 MIMAT0006619 Canis familiaris miR-122 12 80
mml-miR-122a-5p MIMAT0006180 Macaca mulatta miR-122a-5p 12 80
gma-miR1519 MIMAT0007378 Glycine max miR1519 12 80
oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus miR-1398-3p 12 80
oan-miR-1352 MIMAT0006945 Ornithorhynchus anatinus miR-1352 12 80
oan-miR-122-5p MIMAT0006825 Ornithorhynchus anatinus miR-122-5p 12 80
ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p 12 80
ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p 12 80
dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster miR-1007-5p 12 80
dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p 12 80
mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p 12 80
mdo-miR-122-5p MIMAT0004101 Monodelphis domestica miR-122-5p 12 80
sme-miR-87a-5p MIMAT0012109 Schmidtea mediterranea miR-87a-5p 12 80
bta-miR-122 MIMAT0003849 Bos taurus miR-122 12 80
bta-miR-142-3p MIMAT0003791 Bos taurus miR-142-3p 12 80
xtr-miR-122 MIMAT0003585 Xenopus tropicalis miR-122 12 80
rlcv-miR-rL1-11-3p MIMAT0003440 Rhesus lymphocryptovirus miR-rL1... 12 80
hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p 12 80
tni-miR-122 MIMAT0002992 Tetraodon nigroviridis miR-122 12 80
fru-miR-122 MIMAT0002991 Fugu rubripes miR-122 12 80
ppa-miR-141 MIMAT0002201 Pan paniscus miR-141 12 80
ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141 12 80
ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141 12 80
mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p 12 80
ssc-miR-122 MIMAT0002119 Sus scrofa miR-122 12 80
dre-miR-122 MIMAT0001818 Danio rerio miR-122 12 80
gga-miR-122-5p MIMAT0001190 Gallus gallus miR-122-5p 12 80
rno-miR-122-5p MIMAT0000827 Rattus norvegicus miR-122-5p 12 80
hsa-miR-122-5p MIMAT0000421 Homo sapiens miR-122-5p 12 80
mmu-miR-122-5p MIMAT0000246 Mus musculus miR-122-5p 12 80
>ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacactc 7
|||||||
Sbjct: 8 aacactc 2
>hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacactc 7
|||||||
Sbjct: 2 aacactc 8
>hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacactc 7
|||||||
Sbjct: 8 aacactc 2
>cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacactc 7
|||||||
Sbjct: 1 aacactc 7
>ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacactc 7
|||||||
Sbjct: 8 aacactc 2
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacactc 7
|||||||
Sbjct: 2 aacactc 8
>ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>oha-miR-122-5p MIMAT0036666 Ophiophagus hannah miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>tch-miR-122-5p MIMAT0036530 Tupaia chinensis miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746i MIMAT0036383 Glycine max miR9746i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746h MIMAT0036373 Glycine max miR9746h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746g MIMAT0036372 Glycine max miR9746g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746f MIMAT0036371 Glycine max miR9746f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746e MIMAT0036370 Glycine max miR9746e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746d MIMAT0036369 Glycine max miR9746d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746c MIMAT0036368 Glycine max miR9746c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746b MIMAT0036367 Glycine max miR9746b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>gma-miR9746a MIMAT0036366 Glycine max miR9746a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 3 aacact 8
>chi-miR-122 MIMAT0035918 Capra hircus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>eca-miR-9158 MIMAT0034735 Equus caballus miR-9158
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>eca-miR-9004 MIMAT0034544 Equus caballus miR-9004
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>sma-miR-8410-3p MIMAT0033525 Schistosoma mansoni miR-8410-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>ppc-miR-8364j-3p MIMAT0033027 Pristionchus pacificus
miR-8364j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cel-miR-8194-3p MIMAT0032802 Caenorhabditis elegans miR-8194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>ssa-miR-142a-3p MIMAT0032362 Salmo salar miR-142a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>ssa-miR-122-5p MIMAT0032301 Salmo salar miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>bbe-miR-124-5p MIMAT0031577 Branchiostoma belcheri miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>stu-miR398b-5p MIMAT0031333 Solanum tuberosum miR398b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>prd-miR-7937-3p MIMAT0030733 Panagrellus redivivus miR-7937-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>oar-miR-200a MIMAT0030042 Ovis aries miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>cbn-miR-7630 MIMAT0029672 Caenorhabditis brenneri miR-7630
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>ipu-miR-122 MIMAT0029395 Ictalurus punctatus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>gga-miR-7444-3p MIMAT0029043 Gallus gallus miR-7444-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica
miR-1545b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica
miR-199b-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica
miR-199b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>mmu-miR-7228-3p MIMAT0028425 Mus musculus miR-7228-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>ccr-miR-122 MIMAT0026203 Cyprinus carpio miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-6923-3p MIMAT0027747 Mus musculus miR-6923-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>mmu-miR-6908-3p MIMAT0027717 Mus musculus miR-6908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>hsa-miR-6790-5p MIMAT0027480 Homo sapiens miR-6790-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>pol-miR-122-5p MIMAT0025428 Paralichthys olivaceus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-6401 MIMAT0025153 Mus musculus miR-6401
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>bta-miR-574 MIMAT0024577 Bos taurus miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>ggo-miR-122 MIMAT0024179 Gorilla gorilla miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>cgr-miR-122 MIMAT0023739 Cricetulus griseus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>aca-miR-122-5p MIMAT0021723 Anolis carolinensis miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-4658 MIMAT0019725 Homo sapiens miR-4658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>gma-miR4379 MIMAT0018285 Glycine max miR4379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>dme-miR-3641-5p MIMAT0018055 Drosophila melanogaster
miR-3641-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-4280 MIMAT0016911 Homo sapiens miR-4280
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>cin-miR-4139-3p MIMAT0016737 Ciona intestinalis miR-4139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>ppy-miR-122 MIMAT0015746 Pongo pygmaeus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>tgu-miR-122-5p MIMAT0014529 Taeniopygia guttata miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 3 aacact 8
>eca-miR-122 MIMAT0012995 Equus caballus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 3 aacact 8
>dps-miR-2555-5p MIMAT0012372 Drosophila pseudoobscura
miR-2555-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cel-miR-2209c-5p MIMAT0011433 Caenorhabditis elegans
miR-2209c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>cel-miR-2209a-5p MIMAT0011431 Caenorhabditis elegans
miR-2209a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 6 acactc 1
>ppt-miR1023e-5p MIMAT0010024 Physcomitrella patens miR1023e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>cfa-miR-141 MIMAT0009876 Canis familiaris miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>sko-miR-124-5p MIMAT0009624 Saccoglossus kowalevskii miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>bfl-miR-124-5p MIMAT0019146 Branchiostoma floridae miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>tca-miR-124-5p MIMAT0019114 Tribolium castaneum miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>ptr-miR-122 MIMAT0007963 Pan troglodytes miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>cfa-miR-122 MIMAT0006619 Canis familiaris miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mml-miR-122a-5p MIMAT0006180 Macaca mulatta miR-122a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>gma-miR1519 MIMAT0007378 Glycine max miR1519
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus
miR-1398-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>oan-miR-1352 MIMAT0006945 Ornithorhynchus anatinus miR-1352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>oan-miR-122-5p MIMAT0006825 Ornithorhynchus anatinus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ppt-miR1023b-5p MIMAT0005104 Physcomitrella patens miR1023b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>ppt-miR1023a-5p MIMAT0005102 Physcomitrella patens miR1023a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 1 acactc 6
>dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster
miR-1007-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 8 aacact 3
>dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 3 aacact 8
>mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>mdo-miR-122-5p MIMAT0004101 Monodelphis domestica miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>sme-miR-87a-5p MIMAT0012109 Schmidtea mediterranea miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>bta-miR-122 MIMAT0003849 Bos taurus miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>bta-miR-142-3p MIMAT0003791 Bos taurus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacact 6
||||||
Sbjct: 6 aacact 1
>xtr-miR-122 MIMAT0003585 Xenopus tropicalis miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>rlcv-miR-rL1-11-3p MIMAT0003440 Rhesus lymphocryptovirus
miR-rL1-11-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acactc 7
||||||
Sbjct: 3 acactc 8
>hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 7 acactc 2
>tni-miR-122 MIMAT0002992 Tetraodon nigroviridis miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>fru-miR-122 MIMAT0002991 Fugu rubripes miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>ppa-miR-141 MIMAT0002201 Pan paniscus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacact 6
||||||
Sbjct: 1 aacact 6
>ssc-miR-122 MIMAT0002119 Sus scrofa miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>dre-miR-122 MIMAT0001818 Danio rerio miR-122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>gga-miR-122-5p MIMAT0001190 Gallus gallus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>rno-miR-122-5p MIMAT0000827 Rattus norvegicus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>hsa-miR-122-5p MIMAT0000421 Homo sapiens miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
>mmu-miR-122-5p MIMAT0000246 Mus musculus miR-122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acactc 7
||||||
Sbjct: 8 acactc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 178
Number of successful extensions: 113
Number of sequences better than 100.0: 113
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 113
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
