BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s70
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pde-miR952b MIMAT0025345 Pinus densata miR952b                         16   6.9  
pde-miR952a MIMAT0025344 Pinus densata miR952a                         16   6.9  
pta-miR952a MIMAT0005013 Pinus taeda miR952a                           16   6.9  
ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415                    16   6.9  
ssc-miR-9812-3p MIMAT0037030 Sus scrofa miR-9812-3p                    14      27
cfa-miR-8904a MIMAT0034417 Canis familiaris miR-8904a                  14      27
ath-miR8178 MIMAT0032777 Arabidopsis thaliana miR8178                  14      27
bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon miR5174b-5p       14      27
bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon miR5174e-...    14      27
gga-miR-7437-5p MIMAT0029028 Gallus gallus miR-7437-5p                 14      27
oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus miR-7410-5p      14      27
gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p                 14      27
hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198                       14      27
aca-miR-5444b MIMAT0022087 Anolis carolinensis miR-5444b               14      27
bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b             14      27
bfl-miR-4884 MIMAT0020470 Branchiostoma floridae miR-4884              14      27
gma-miR394a-3p MIMAT0018341 Glycine max miR394a-3p                     14      27
gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p                 14      27
>pde-miR952b MIMAT0025345 Pinus densata miR952b
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aacagagc 8
         ||||||||
Sbjct: 1 aacagagc 8
>pde-miR952a MIMAT0025344 Pinus densata miR952a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aacagagc 8
         ||||||||
Sbjct: 1 aacagagc 8
>pta-miR952a MIMAT0005013 Pinus taeda miR952a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aacagagc 8
         ||||||||
Sbjct: 1 aacagagc 8
>ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aacagagc 8
         ||||||||
Sbjct: 1 aacagagc 8
>ssc-miR-9812-3p MIMAT0037030 Sus scrofa miR-9812-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 8 acagagc 2
>cfa-miR-8904a MIMAT0034417 Canis familiaris miR-8904a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 2 aacagag 8
>ath-miR8178 MIMAT0032777 Arabidopsis thaliana miR8178
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 2 aacagag 8
>bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon
         miR5174b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 8 aacagag 2
>bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon
         miR5174e-5p.1
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 8 aacagag 2
>gga-miR-7437-5p MIMAT0029028 Gallus gallus miR-7437-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 2 aacagag 8
>oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus
         miR-7410-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 7 acagagc 1
>gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 7 acagagc 1
>hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 7 acagagc 1
>aca-miR-5444b MIMAT0022087 Anolis carolinensis miR-5444b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 7 aacagag 1
>bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aacagag 7
         |||||||
Sbjct: 8 aacagag 2
>bfl-miR-4884 MIMAT0020470 Branchiostoma floridae miR-4884
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 8 acagagc 2
>gma-miR394a-3p MIMAT0018341 Glycine max miR394a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 8 acagagc 2
>gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acagagc 8
         |||||||
Sbjct: 8 acagagc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 153
Number of successful extensions: 124
Number of sequences better than 100.0: 18
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)