BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s70
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pde-miR952b MIMAT0025345 Pinus densata miR952b 16 6.9
pde-miR952a MIMAT0025344 Pinus densata miR952a 16 6.9
pta-miR952a MIMAT0005013 Pinus taeda miR952a 16 6.9
ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415 16 6.9
ssc-miR-9812-3p MIMAT0037030 Sus scrofa miR-9812-3p 14 27
cfa-miR-8904a MIMAT0034417 Canis familiaris miR-8904a 14 27
ath-miR8178 MIMAT0032777 Arabidopsis thaliana miR8178 14 27
bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon miR5174b-5p 14 27
bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon miR5174e-... 14 27
gga-miR-7437-5p MIMAT0029028 Gallus gallus miR-7437-5p 14 27
oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus miR-7410-5p 14 27
gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p 14 27
hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198 14 27
aca-miR-5444b MIMAT0022087 Anolis carolinensis miR-5444b 14 27
bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b 14 27
bfl-miR-4884 MIMAT0020470 Branchiostoma floridae miR-4884 14 27
gma-miR394a-3p MIMAT0018341 Glycine max miR394a-3p 14 27
gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p 14 27
>pde-miR952b MIMAT0025345 Pinus densata miR952b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacagagc 8
||||||||
Sbjct: 1 aacagagc 8
>pde-miR952a MIMAT0025344 Pinus densata miR952a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacagagc 8
||||||||
Sbjct: 1 aacagagc 8
>pta-miR952a MIMAT0005013 Pinus taeda miR952a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacagagc 8
||||||||
Sbjct: 1 aacagagc 8
>ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacagagc 8
||||||||
Sbjct: 1 aacagagc 8
>ssc-miR-9812-3p MIMAT0037030 Sus scrofa miR-9812-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 8 acagagc 2
>cfa-miR-8904a MIMAT0034417 Canis familiaris miR-8904a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacagag 7
|||||||
Sbjct: 2 aacagag 8
>ath-miR8178 MIMAT0032777 Arabidopsis thaliana miR8178
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacagag 7
|||||||
Sbjct: 2 aacagag 8
>bdi-miR5174b-5p MIMAT0030101 Brachypodium distachyon
miR5174b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacagag 7
|||||||
Sbjct: 8 aacagag 2
>bdi-miR5174e-5p.1 MIMAT0030068 Brachypodium distachyon
miR5174e-5p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacagag 7
|||||||
Sbjct: 8 aacagag 2
>gga-miR-7437-5p MIMAT0029028 Gallus gallus miR-7437-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacagag 7
|||||||
Sbjct: 2 aacagag 8
>oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus
miR-7410-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 7 acagagc 1
>gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 7 acagagc 1
>hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 7 acagagc 1
>aca-miR-5444b MIMAT0022087 Anolis carolinensis miR-5444b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacagag 7
|||||||
Sbjct: 7 aacagag 1
>bdi-miR5175b MIMAT0020722 Brachypodium distachyon miR5175b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacagag 7
|||||||
Sbjct: 8 aacagag 2
>bfl-miR-4884 MIMAT0020470 Branchiostoma floridae miR-4884
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 8 acagagc 2
>gma-miR394a-3p MIMAT0018341 Glycine max miR394a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 8 acagagc 2
>gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acagagc 8
|||||||
Sbjct: 8 acagagc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 153
Number of successful extensions: 124
Number of sequences better than 100.0: 18
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)