BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-8-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p        16   6.9  
efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582                      14      27
sma-miR-8454-3p MIMAT0033621 Schistosoma mansoni miR-8454-3p           14      27
prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p         14      27
bdi-miR7775-5p MIMAT0030300 Brachypodium distachyon miR7775-5p         14      27
ssc-miR-582 MIMAT0025380 Sus scrofa miR-582                            14      27
ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027                  14      27
eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p                  14      27
>ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 aaccggtg 8
         ||||||||
Sbjct: 8 aaccggtg 1
>efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 2 aaccggt 8
>sma-miR-8454-3p MIMAT0033621 Schistosoma mansoni miR-8454-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 7 aaccggt 1
>prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 accggtg 8
         |||||||
Sbjct: 7 accggtg 1
>bdi-miR7775-5p MIMAT0030300 Brachypodium distachyon miR7775-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 7 aaccggt 1
>ssc-miR-582 MIMAT0025380 Sus scrofa miR-582
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 2 aaccggt 8
>ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 7 aaccggt 1
>eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aaccggt 7
         |||||||
Sbjct: 2 aaccggt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 199
Number of extensions: 190
Number of successful extensions: 159
Number of sequences better than 100.0: 8
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)