BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p 16 6.9
efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582 14 27
sma-miR-8454-3p MIMAT0033621 Schistosoma mansoni miR-8454-3p 14 27
prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p 14 27
bdi-miR7775-5p MIMAT0030300 Brachypodium distachyon miR7775-5p 14 27
ssc-miR-582 MIMAT0025380 Sus scrofa miR-582 14 27
ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027 14 27
eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p 14 27
>ppc-miR-8251-5p MIMAT0032968 Pristionchus pacificus miR-8251-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aaccggtg 8
||||||||
Sbjct: 8 aaccggtg 1
>efu-miR-582 MIMAT0035119 Eptesicus fuscus miR-582
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccggt 7
|||||||
Sbjct: 2 aaccggt 8
>sma-miR-8454-3p MIMAT0033621 Schistosoma mansoni miR-8454-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaccggt 7
|||||||
Sbjct: 7 aaccggt 1
>prd-miR-7968-3p MIMAT0030839 Panagrellus redivivus miR-7968-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 accggtg 8
|||||||
Sbjct: 7 accggtg 1
>bdi-miR7775-5p MIMAT0030300 Brachypodium distachyon miR7775-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaccggt 7
|||||||
Sbjct: 7 aaccggt 1
>ssc-miR-582 MIMAT0025380 Sus scrofa miR-582
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccggt 7
|||||||
Sbjct: 2 aaccggt 8
>ath-miR5027 MIMAT0020533 Arabidopsis thaliana miR5027
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaccggt 7
|||||||
Sbjct: 7 aaccggt 1
>eca-miR-582-3p MIMAT0013104 Equus caballus miR-582-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaccggt 7
|||||||
Sbjct: 2 aaccggt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 199
Number of extensions: 190
Number of successful extensions: 159
Number of sequences better than 100.0: 8
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)