BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-582-3p MIMAT0017360 Rattus norvegicus miR-582-3p 16 6.9
oan-miR-1421af-5p MIMAT0007264 Ornithorhynchus anatinus miR-1421... 16 6.9
oan-miR-1421ae MIMAT0007261 Ornithorhynchus anatinus miR-1421ae 16 6.9
oan-miR-1421ad-5p MIMAT0007259 Ornithorhynchus anatinus miR-1421... 16 6.9
oan-miR-1421v-5p MIMAT0007236 Ornithorhynchus anatinus miR-1421v-5p 16 6.9
oan-miR-1421t-5p MIMAT0007086 Ornithorhynchus anatinus miR-1421t-5p 16 6.9
oan-miR-1421r-5p MIMAT0007082 Ornithorhynchus anatinus miR-1421r-5p 16 6.9
oan-miR-1421k-5p MIMAT0007066 Ornithorhynchus anatinus miR-1421k-5p 16 6.9
bbe-miR-125a-3p MIMAT0031580 Branchiostoma belcheri miR-125a-3p 14 27
cgr-miR-582 MIMAT0023985 Cricetulus griseus miR-582 14 27
pti-miR5474 MIMAT0022107 Phaeodactylum tricornutum miR5474 14 27
osa-miR5145 MIMAT0021090 Oryza sativa miR5145 14 27
mmu-miR-5107-3p MIMAT0022985 Mus musculus miR-5107-3p 14 27
spu-miR-125-3p MIMAT0019161 Strongylocentrotus purpuratus miR-12... 14 27
bfl-miR-125a-3p MIMAT0019147 Branchiostoma floridae miR-125a-3p 14 27
ptr-miR-649 MIMAT0008300 Pan troglodytes miR-649 14 27
ptr-miR-552 MIMAT0008233 Pan troglodytes miR-552 14 27
mml-miR-649 MIMAT0006487 Macaca mulatta miR-649 14 27
oan-miR-1421aa-5p MIMAT0007249 Ornithorhynchus anatinus miR-1421... 14 27
mmu-miR-582-3p MIMAT0005292 Mus musculus miR-582-3p 14 27
hsa-miR-649 MIMAT0003319 Homo sapiens miR-649 14 27
hsa-miR-552-3p MIMAT0003215 Homo sapiens miR-552-3p 14 27
dre-miR-125b-3-3p MIMAT0031965 Danio rerio miR-125b-3-3p 14 27
>rno-miR-582-3p MIMAT0017360 Rattus norvegicus miR-582-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacctgtt 8
||||||||
Sbjct: 1 aacctgtt 8
>oan-miR-1421af-5p MIMAT0007264 Ornithorhynchus anatinus
miR-1421af-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421ae MIMAT0007261 Ornithorhynchus anatinus miR-1421ae
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421ad-5p MIMAT0007259 Ornithorhynchus anatinus
miR-1421ad-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421v-5p MIMAT0007236 Ornithorhynchus anatinus
miR-1421v-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421t-5p MIMAT0007086 Ornithorhynchus anatinus
miR-1421t-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421r-5p MIMAT0007082 Ornithorhynchus anatinus
miR-1421r-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>oan-miR-1421k-5p MIMAT0007066 Ornithorhynchus anatinus
miR-1421k-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aacctgtt 8
||||||||
Sbjct: 8 aacctgtt 1
>bbe-miR-125a-3p MIMAT0031580 Branchiostoma belcheri miR-125a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacctgt 7
|||||||
Sbjct: 7 aacctgt 1
>cgr-miR-582 MIMAT0023985 Cricetulus griseus miR-582
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>pti-miR5474 MIMAT0022107 Phaeodactylum tricornutum miR5474
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 1 aacctgt 7
>osa-miR5145 MIMAT0021090 Oryza sativa miR5145
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctgtt 8
|||||||
Sbjct: 1 acctgtt 7
>mmu-miR-5107-3p MIMAT0022985 Mus musculus miR-5107-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>spu-miR-125-3p MIMAT0019161 Strongylocentrotus purpuratus
miR-125-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacctgt 7
|||||||
Sbjct: 7 aacctgt 1
>bfl-miR-125a-3p MIMAT0019147 Branchiostoma floridae miR-125a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacctgt 7
|||||||
Sbjct: 7 aacctgt 1
>ptr-miR-649 MIMAT0008300 Pan troglodytes miR-649
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>ptr-miR-552 MIMAT0008233 Pan troglodytes miR-552
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acctgtt 8
|||||||
Sbjct: 7 acctgtt 1
>mml-miR-649 MIMAT0006487 Macaca mulatta miR-649
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>oan-miR-1421aa-5p MIMAT0007249 Ornithorhynchus anatinus
miR-1421aa-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acctgtt 8
|||||||
Sbjct: 7 acctgtt 1
>mmu-miR-582-3p MIMAT0005292 Mus musculus miR-582-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>hsa-miR-649 MIMAT0003319 Homo sapiens miR-649
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacctgt 7
|||||||
Sbjct: 2 aacctgt 8
>hsa-miR-552-3p MIMAT0003215 Homo sapiens miR-552-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acctgtt 8
|||||||
Sbjct: 7 acctgtt 1
>dre-miR-125b-3-3p MIMAT0031965 Danio rerio miR-125b-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacctgt 7
|||||||
Sbjct: 7 aacctgt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 200
Number of extensions: 169
Number of successful extensions: 111
Number of sequences better than 100.0: 23
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
