BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p 14 20
stu-miR7122-3p MIMAT0030960 Solanum tuberosum miR7122-3p 14 20
mdo-miR-7362-5p MIMAT0028736 Monodelphis domestica miR-7362-5p 14 20
blv-miR-B3-3p MIMAT0025863 Bovine leukemia miR-B3-3p 14 20
ame-miR-3723 MIMAT0018589 Apis mellifera miR-3723 14 20
aly-miR397b-3p MIMAT0017564 Arabidopsis lyrata miR397b-3p 14 20
oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p 12 80
eca-miR-9145 MIMAT0034721 Equus caballus miR-9145 12 80
pxy-miR-8544-5p MIMAT0033811 Plutella xylostella miR-8544-5p 12 80
ssa-miR-375-2-5p MIMAT0032627 Salmo salar miR-375-2-5p 12 80
prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p 12 80
mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d 12 80
tca-miR-3863-3p MIMAT0018809 Tribolium castaneum miR-3863-3p 12 80
cin-miR-4067-3p MIMAT0016623 Ciona intestinalis miR-4067-3p 12 80
iltv-miR-I6-3p MIMAT0012731 Infectious laryngotracheitis miR-I6-3p 12 80
mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c 12 80
mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b 12 80
mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a 12 80
dps-miR-2575-3p MIMAT0012421 Drosophila pseudoobscura miR-2575-3p 12 80
cre-miR910 MIMAT0004393 Chlamydomonas reinhardtii miR910 12 80
>sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacgctg 7
|||||||
Sbjct: 2 aacgctg 8
>stu-miR7122-3p MIMAT0030960 Solanum tuberosum miR7122-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacgctg 7
|||||||
Sbjct: 8 aacgctg 2
>mdo-miR-7362-5p MIMAT0028736 Monodelphis domestica miR-7362-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacgctg 7
|||||||
Sbjct: 8 aacgctg 2
>blv-miR-B3-3p MIMAT0025863 Bovine leukemia miR-B3-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacgctg 7
|||||||
Sbjct: 2 aacgctg 8
>ame-miR-3723 MIMAT0018589 Apis mellifera miR-3723
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacgctg 7
|||||||
Sbjct: 8 aacgctg 2
>aly-miR397b-3p MIMAT0017564 Arabidopsis lyrata miR397b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacgctg 7
|||||||
Sbjct: 8 aacgctg 2
>oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgctg 7
||||||
Sbjct: 8 acgctg 3
>eca-miR-9145 MIMAT0034721 Equus caballus miR-9145
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacgct 6
||||||
Sbjct: 8 aacgct 3
>pxy-miR-8544-5p MIMAT0033811 Plutella xylostella miR-8544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacgct 6
||||||
Sbjct: 1 aacgct 6
>ssa-miR-375-2-5p MIMAT0032627 Salmo salar miR-375-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 1 acgctg 6
>prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacgct 6
||||||
Sbjct: 6 aacgct 1
>mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 3 acgctg 8
>tca-miR-3863-3p MIMAT0018809 Tribolium castaneum miR-3863-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgctg 7
||||||
Sbjct: 7 acgctg 2
>cin-miR-4067-3p MIMAT0016623 Ciona intestinalis miR-4067-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacgct 6
||||||
Sbjct: 6 aacgct 1
>iltv-miR-I6-3p MIMAT0012731 Infectious laryngotracheitis
miR-I6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 1 acgctg 6
>mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 3 acgctg 8
>mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 3 acgctg 8
>mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acgctg 7
||||||
Sbjct: 3 acgctg 8
>dps-miR-2575-3p MIMAT0012421 Drosophila pseudoobscura
miR-2575-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgctg 7
||||||
Sbjct: 6 acgctg 1
>cre-miR910 MIMAT0004393 Chlamydomonas reinhardtii miR910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acgctg 7
||||||
Sbjct: 8 acgctg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 26
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
