BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s14
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-191-5p MIMAT0036777 Ophiophagus hannah miR-191-5p 14 27
tch-miR-191-5p MIMAT0036571 Tupaia chinensis miR-191-5p 14 27
ocu-miR-191-5p MIMAT0036335 Oryctolagus cuniculus miR-191-5p 14 27
chi-miR-191-5p MIMAT0036022 Capra hircus miR-191-5p 14 27
ssa-miR-462b-5p MIMAT0032655 Salmo salar miR-462b-5p 14 27
ssa-miR-462a-5p MIMAT0032653 Salmo salar miR-462a-5p 14 27
stu-miR7988 MIMAT0030862 Solanum tuberosum miR7988 14 27
oar-miR-191 MIMAT0030038 Ovis aries miR-191 14 27
ipu-miR-462 MIMAT0029519 Ictalurus punctatus miR-462 14 27
ggo-miR-191 MIMAT0024093 Gorilla gorilla miR-191 14 27
cgr-miR-191-5p MIMAT0023822 Cricetulus griseus miR-191-5p 14 27
aca-miR-191-5p MIMAT0021824 Anolis carolinensis miR-191-5p 14 27
mtr-miR5282 MIMAT0021326 Medicago truncatula miR5282 14 27
ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788 14 27
ppy-miR-191 MIMAT0015785 Pongo pygmaeus miR-191 14 27
ssc-miR-191 MIMAT0013876 Sus scrofa miR-191 14 27
eca-miR-191a MIMAT0013079 Equus caballus miR-191a 14 27
ptr-miR-191 MIMAT0008056 Pan troglodytes miR-191 14 27
cfa-miR-191 MIMAT0006638 Canis familiaris miR-191 14 27
mml-miR-191-5p MIMAT0006223 Macaca mulatta miR-191-5p 14 27
oan-miR-191-5p MIMAT0007152 Ornithorhynchus anatinus miR-191-5p 14 27
mdo-miR-191-5p MIMAT0004152 Monodelphis domestica miR-191-5p 14 27
bta-miR-191 MIMAT0003819 Bos taurus miR-191 14 27
xtr-miR-191 MIMAT0003689 Xenopus tropicalis miR-191 14 27
dre-miR-462 MIMAT0001855 Danio rerio miR-462 14 27
rno-miR-191a-5p MIMAT0000866 Rattus norvegicus miR-191a-5p 14 27
hsa-miR-191-5p MIMAT0000440 Homo sapiens miR-191-5p 14 27
mmu-miR-191-5p MIMAT0000221 Mus musculus miR-191-5p 14 27
>oha-miR-191-5p MIMAT0036777 Ophiophagus hannah miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>tch-miR-191-5p MIMAT0036571 Tupaia chinensis miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ocu-miR-191-5p MIMAT0036335 Oryctolagus cuniculus miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>chi-miR-191-5p MIMAT0036022 Capra hircus miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ssa-miR-462b-5p MIMAT0032655 Salmo salar miR-462b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ssa-miR-462a-5p MIMAT0032653 Salmo salar miR-462a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>stu-miR7988 MIMAT0030862 Solanum tuberosum miR7988
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 1 aacggaa 7
>oar-miR-191 MIMAT0030038 Ovis aries miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ipu-miR-462 MIMAT0029519 Ictalurus punctatus miR-462
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ggo-miR-191 MIMAT0024093 Gorilla gorilla miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>cgr-miR-191-5p MIMAT0023822 Cricetulus griseus miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>aca-miR-191-5p MIMAT0021824 Anolis carolinensis miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>mtr-miR5282 MIMAT0021326 Medicago truncatula miR5282
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acggaat 8
|||||||
Sbjct: 2 acggaat 8
>ame-miR-3788 MIMAT0018567 Apis mellifera miR-3788
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacggaa 7
|||||||
Sbjct: 8 aacggaa 2
>ppy-miR-191 MIMAT0015785 Pongo pygmaeus miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ssc-miR-191 MIMAT0013876 Sus scrofa miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>eca-miR-191a MIMAT0013079 Equus caballus miR-191a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>ptr-miR-191 MIMAT0008056 Pan troglodytes miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>cfa-miR-191 MIMAT0006638 Canis familiaris miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>mml-miR-191-5p MIMAT0006223 Macaca mulatta miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>oan-miR-191-5p MIMAT0007152 Ornithorhynchus anatinus miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>mdo-miR-191-5p MIMAT0004152 Monodelphis domestica miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>bta-miR-191 MIMAT0003819 Bos taurus miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>xtr-miR-191 MIMAT0003689 Xenopus tropicalis miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>dre-miR-462 MIMAT0001855 Danio rerio miR-462
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>rno-miR-191a-5p MIMAT0000866 Rattus norvegicus miR-191a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>hsa-miR-191-5p MIMAT0000440 Homo sapiens miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
>mmu-miR-191-5p MIMAT0000221 Mus musculus miR-191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggaa 7
|||||||
Sbjct: 2 aacggaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 83
Number of successful extensions: 65
Number of sequences better than 100.0: 28
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
