BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bhrf1-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster miR-9378-3p 14 20
hsa-miR-4681 MIMAT0019766 Homo sapiens miR-4681 14 20
ebv-miR-BHRF1-3 MIMAT0000998 Epstein Barr miR-BHRF1-3 14 20
ssc-miR-9784-5p MIMAT0037001 Sus scrofa miR-9784-5p 12 80
bra-miR9555a-3p MIMAT0035664 Brassica rapa miR9555a-3p 12 80
eca-miR-8937 MIMAT0034466 Equus caballus miR-8937 12 80
prd-miR-7925-5p MIMAT0030698 Panagrellus redivivus miR-7925-5p 12 80
prd-miR-7887-3p MIMAT0030545 Panagrellus redivivus miR-7887-3p 12 80
bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p 12 80
bdi-miR7721-5p MIMAT0030166 Brachypodium distachyon miR7721-5p 12 80
cbr-miR-7595 MIMAT0029602 Caenorhabditis briggsae miR-7595 12 80
gga-miR-7450-3p MIMAT0029055 Gallus gallus miR-7450-3p 12 80
gga-miR-6542-3p MIMAT0025590 Gallus gallus miR-6542-3p 12 80
pma-miR-4614 MIMAT0019648 Petromyzon marinus miR-4614 12 80
pma-miR-216a-3p MIMAT0019526 Petromyzon marinus miR-216a-3p 12 80
mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus miR-M1-14-5p 12 80
cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p 12 80
bta-miR-2883 MIMAT0013841 Bos taurus miR-2883 12 80
hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2 12 80
bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p 12 80
ppc-miR-2237a MIMAT0011702 Pristionchus pacificus miR-2237a 12 80
osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p 12 80
mml-miR-552 MIMAT0006421 Macaca mulatta miR-552 12 80
oan-miR-1381-3p MIMAT0007121 Ornithorhynchus anatinus miR-1381-3p 12 80
>dme-miR-9378-3p MIMAT0035220 Drosophila melanogaster
miR-9378-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggga 7
|||||||
Sbjct: 2 aacggga 8
>hsa-miR-4681 MIMAT0019766 Homo sapiens miR-4681
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggga 7
|||||||
Sbjct: 1 aacggga 7
>ebv-miR-BHRF1-3 MIMAT0000998 Epstein Barr miR-BHRF1-3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacggga 7
|||||||
Sbjct: 2 aacggga 8
>ssc-miR-9784-5p MIMAT0037001 Sus scrofa miR-9784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacggg 6
||||||
Sbjct: 1 aacggg 6
>bra-miR9555a-3p MIMAT0035664 Brassica rapa miR9555a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggga 7
||||||
Sbjct: 8 acggga 3
>eca-miR-8937 MIMAT0034466 Equus caballus miR-8937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggga 7
||||||
Sbjct: 6 acggga 1
>prd-miR-7925-5p MIMAT0030698 Panagrellus redivivus miR-7925-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>prd-miR-7887-3p MIMAT0030545 Panagrellus redivivus miR-7887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 8 aacggg 3
>bdi-miR7763-3p MIMAT0030273 Brachypodium distachyon miR7763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggga 7
||||||
Sbjct: 8 acggga 3
>bdi-miR7721-5p MIMAT0030166 Brachypodium distachyon miR7721-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>cbr-miR-7595 MIMAT0029602 Caenorhabditis briggsae miR-7595
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 8 aacggg 3
>gga-miR-7450-3p MIMAT0029055 Gallus gallus miR-7450-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 6 aacggg 1
>gga-miR-6542-3p MIMAT0025590 Gallus gallus miR-6542-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>pma-miR-4614 MIMAT0019648 Petromyzon marinus miR-4614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>pma-miR-216a-3p MIMAT0019526 Petromyzon marinus miR-216a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus
miR-M1-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 6 aacggg 1
>cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 6 aacggg 1
>bta-miR-2883 MIMAT0013841 Bos taurus miR-2883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggga 7
||||||
Sbjct: 8 acggga 3
>hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 6 aacggg 1
>bmo-miR-2757-5p MIMAT0013627 Bombyx mori miR-2757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 1 acggga 6
>ppc-miR-2237a MIMAT0011702 Pristionchus pacificus miR-2237a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aacggg 6
||||||
Sbjct: 8 aacggg 3
>osa-miR2098-5p MIMAT0010060 Oryza sativa miR2098-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggga 7
||||||
Sbjct: 6 acggga 1
>mml-miR-552 MIMAT0006421 Macaca mulatta miR-552
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aacggg 6
||||||
Sbjct: 1 aacggg 6
>oan-miR-1381-3p MIMAT0007121 Ornithorhynchus anatinus
miR-1381-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggga 7
||||||
Sbjct: 3 acggga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 28
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 100.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
