BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh106-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p 16 6.9
gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446 14 27
stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p 14 27
ame-miR-6002-3p MIMAT0023544 Apis mellifera miR-6002-3p 14 27
tca-miR-3897-5p MIMAT0018898 Tribolium castaneum miR-3897-5p 14 27
sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p 14 27
sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b 14 27
sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a 14 27
cel-miR-792-5p MIMAT0020351 Caenorhabditis elegans miR-792-5p 14 27
>oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aactctcg 8
||||||||
Sbjct: 8 aactctcg 1
>gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aactctc 7
|||||||
Sbjct: 1 aactctc 7
>stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 actctcg 8
|||||||
Sbjct: 8 actctcg 2
>ame-miR-6002-3p MIMAT0023544 Apis mellifera miR-6002-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 actctcg 8
|||||||
Sbjct: 7 actctcg 1
>tca-miR-3897-5p MIMAT0018898 Tribolium castaneum miR-3897-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 actctcg 8
|||||||
Sbjct: 2 actctcg 8
>sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 actctcg 8
|||||||
Sbjct: 8 actctcg 2
>sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 actctcg 8
|||||||
Sbjct: 8 actctcg 2
>sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 actctcg 8
|||||||
Sbjct: 8 actctcg 2
>cel-miR-792-5p MIMAT0020351 Caenorhabditis elegans miR-792-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactctc 7
|||||||
Sbjct: 8 aactctc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 124
Number of extensions: 114
Number of successful extensions: 86
Number of sequences better than 100.0: 9
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
