BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-29a-1-5p MIMAT0036876 Ophiophagus hannah miR-29a-1-5p 14 20
chi-miR-217-3p MIMAT0036065 Capra hircus miR-217-3p 14 20
prd-miR-5594-5p MIMAT0030764 Panagrellus redivivus miR-5594-5p 14 20
aca-miR-217-3p MIMAT0021879 Anolis carolinensis miR-217-3p 14 20
tgu-miR-217-3p MIMAT0027010 Taeniopygia guttata miR-217-3p 14 20
dps-miR-2547-3p MIMAT0012355 Drosophila pseudoobscura miR-2547-3p 14 20
oan-miR-217-3p MIMAT0007222 Ornithorhynchus anatinus miR-217-3p 14 20
oan-miR-1358 MIMAT0006990 Ornithorhynchus anatinus miR-1358 14 20
ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p 14 20
rno-miR-217-3p MIMAT0017161 Rattus norvegicus miR-217-3p 14 20
mmu-miR-217-3p MIMAT0017072 Mus musculus miR-217-3p 14 20
oha-miR-223-3p MIMAT0036853 Ophiophagus hannah miR-223-3p 12 80
chi-miR-29a-5p MIMAT0036112 Capra hircus miR-29a-5p 12 80
chi-miR-223-3p MIMAT0036072 Capra hircus miR-223-3p 12 80
chi-miR-101-5p MIMAT0035899 Capra hircus miR-101-5p 12 80
gsa-miR-9-3p MIMAT0035289 Gyrodactylus salaris miR-9-3p 12 80
efu-miR-223 MIMAT0035198 Eptesicus fuscus miR-223 12 80
efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c 12 80
eca-miR-8908a MIMAT0034713 Equus caballus miR-8908a 12 80
gra-miR8704 MIMAT0034252 Gossypium raimondii miR8704 12 80
pxy-miR-8547 MIMAT0033817 Plutella xylostella miR-8547 12 80
ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p 12 80
ppc-miR-8266-5p MIMAT0033016 Pristionchus pacificus miR-8266-5p 12 80
ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p 12 80
ssa-miR-29b-1-5p MIMAT0032585 Salmo salar miR-29b-1-5p 12 80
ssa-miR-181c-3p MIMAT0032426 Salmo salar miR-181c-3p 12 80
ssa-miR-101a-5p MIMAT0032280 Salmo salar miR-101a-5p 12 80
cpa-miR8147 MIMAT0031844 Carica papaya miR8147 12 80
mmu-miR-8094 MIMAT0031395 Mus musculus miR-8094 12 80
bdi-miR7716-5p MIMAT0030154 Brachypodium distachyon miR7716-5p 12 80
mmu-miR-7651-3p MIMAT0029805 Mus musculus miR-7651-3p 12 80
ipu-miR-29a MIMAT0029537 Ictalurus punctatus miR-29a 12 80
oan-miR-181b-2-3p MIMAT0031055 Ornithorhynchus anatinus miR-181b... 12 80
mdo-miR-181b-2-3p MIMAT0031046 Monodelphis domestica miR-181b-2-3p 12 80
mml-miR-7208-5p MIMAT0028382 Macaca mulatta miR-7208-5p 12 80
bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p 12 80
mml-miR-873-3p MIMAT0027106 Macaca mulatta miR-873-3p 12 80
cgr-miR-29a-5p MIMAT0023883 Cricetulus griseus miR-29a-5p 12 80
ola-miR-223 MIMAT0022630 Oryzias latipes miR-223 12 80
ola-miR-101b-5p MIMAT0022605 Oryzias latipes miR-101b-5p 12 80
ola-miR-101a-5p MIMAT0022542 Oryzias latipes miR-101a-5p 12 80
tur-miR-34-3p MIMAT0023097 Tetranychus urticae miR-34-3p 12 80
cin-miR-5612-5p MIMAT0022351 Ciona intestinalis miR-5612-5p 12 80
aau-miR168 MIMAT0022678 Acacia auriculiformis miR168 12 80
aca-miR-223-3p MIMAT0021894 Anolis carolinensis miR-223-3p 12 80
aca-miR-101-1-5p MIMAT0021710 Anolis carolinensis miR-101-1-5p 12 80
hsa-miR-4724-5p MIMAT0019841 Homo sapiens miR-4724-5p 12 80
pma-miR-29a-5p MIMAT0019416 Petromyzon marinus miR-29a-5p 12 80
hsa-miR-3920 MIMAT0018195 Homo sapiens miR-3920 12 80
tca-miR-3869-5p MIMAT0018830 Tribolium castaneum miR-3869-5p 12 80
cin-miR-4056-5p MIMAT0016601 Ciona intestinalis miR-4056-5p 12 80
tgu-miR-223 MIMAT0014599 Taeniopygia guttata miR-223 12 80
tgu-miR-29a-1-5p MIMAT0026990 Taeniopygia guttata miR-29a-1-5p 12 80
tgu-miR-101-2-5p MIMAT0014631 Taeniopygia guttata miR-101-2-5p 12 80
osa-miR2870 MIMAT0013817 Oryza sativa miR2870 12 80
eca-miR-223 MIMAT0013205 Equus caballus miR-223 12 80
rno-miR-465-3p MIMAT0017367 Rattus norvegicus miR-465-3p 12 80
iltv-miR-I1-5p MIMAT0012723 Infectious laryngotracheitis miR-I1-5p 12 80
bta-miR-2346 MIMAT0011881 Bos taurus miR-2346 12 80
cfa-miR-223 MIMAT0009852 Canis familiaris miR-223 12 80
bta-miR-223 MIMAT0009270 Bos taurus miR-223 12 80
xla-miR-223 MIMAT0011144 Xenopus laevis miR-223 12 80
mml-miR-181b-2-3p MIMAT0031042 Macaca mulatta miR-181b-2-3p 12 80
gga-miR-101-2-5p MIMAT0031077 Gallus gallus miR-101-2-5p 12 80
oan-miR-223-3p MIMAT0007020 Ornithorhynchus anatinus miR-223-3p 12 80
oan-miR-29a-1-5p MIMAT0006806 Ornithorhynchus anatinus miR-29a-1-5p 12 80
pta-miR952b MIMAT0005014 Pinus taeda miR952b 12 80
ppt-miR899 MIMAT0004369 Physcomitrella patens miR899 12 80
mdo-miR-223-3p MIMAT0004135 Monodelphis domestica miR-223-3p 12 80
mdo-miR-101-1-5p MIMAT0031076 Monodelphis domestica miR-101-1-5p 12 80
sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p 12 80
xtr-miR-223 MIMAT0003634 Xenopus tropicalis miR-223 12 80
hsa-miR-584-3p MIMAT0022708 Homo sapiens miR-584-3p 12 80
tni-miR-223 MIMAT0002895 Tetraodon nigroviridis miR-223 12 80
fru-miR-223 MIMAT0002894 Fugu rubripes miR-223 12 80
ppa-miR-223 MIMAT0002593 Pan paniscus miR-223 12 80
sla-miR-223 MIMAT0002592 Saguinus labiatus miR-223 12 80
ppy-miR-223 MIMAT0002591 Pongo pygmaeus miR-223 12 80
ggo-miR-223 MIMAT0002590 Gorilla gorilla miR-223 12 80
ptr-miR-223 MIMAT0002589 Pan troglodytes miR-223 12 80
mml-miR-223 MIMAT0002588 Macaca mulatta miR-223 12 80
mml-miR-101-1-5p MIMAT0026581 Macaca mulatta miR-101-1-5p 12 80
zma-miR393a-3p MIMAT0015207 Zea mays miR393a-3p 12 80
dre-miR-223 MIMAT0001290 Danio rerio miR-223 12 80
gga-miR-181b-2-3p MIMAT0031059 Gallus gallus miR-181b-2-3p 12 80
gga-miR-223 MIMAT0001140 Gallus gallus miR-223 12 80
gga-miR-217-3p MIMAT0026513 Gallus gallus miR-217-3p 12 80
rno-miR-223-3p MIMAT0000892 Rattus norvegicus miR-223-3p 12 80
rno-miR-101a-5p MIMAT0004726 Rattus norvegicus miR-101a-5p 12 80
rno-miR-29a-5p MIMAT0004718 Rattus norvegicus miR-29a-5p 12 80
mmu-miR-223-3p MIMAT0000665 Mus musculus miR-223-3p 12 80
mmu-miR-29a-5p MIMAT0004631 Mus musculus miR-29a-5p 12 80
hsa-miR-223-3p MIMAT0000280 Homo sapiens miR-223-3p 12 80
mmu-miR-101a-5p MIMAT0004526 Mus musculus miR-101a-5p 12 80
hsa-miR-29a-5p MIMAT0004503 Homo sapiens miR-29a-5p 12 80
>oha-miR-29a-1-5p MIMAT0036876 Ophiophagus hannah miR-29a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aactgat 7
|||||||
Sbjct: 1 aactgat 7
>chi-miR-217-3p MIMAT0036065 Capra hircus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 8 aactgat 2
>prd-miR-5594-5p MIMAT0030764 Panagrellus redivivus miR-5594-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 7 aactgat 1
>aca-miR-217-3p MIMAT0021879 Anolis carolinensis miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 8 aactgat 2
>tgu-miR-217-3p MIMAT0027010 Taeniopygia guttata miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 7 aactgat 1
>dps-miR-2547-3p MIMAT0012355 Drosophila pseudoobscura
miR-2547-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aactgat 7
|||||||
Sbjct: 1 aactgat 7
>oan-miR-217-3p MIMAT0007222 Ornithorhynchus anatinus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 8 aactgat 2
>oan-miR-1358 MIMAT0006990 Ornithorhynchus anatinus miR-1358
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aactgat 7
|||||||
Sbjct: 1 aactgat 7
>ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 7 aactgat 1
>rno-miR-217-3p MIMAT0017161 Rattus norvegicus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 7 aactgat 1
>mmu-miR-217-3p MIMAT0017072 Mus musculus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aactgat 7
|||||||
Sbjct: 8 aactgat 2
>oha-miR-223-3p MIMAT0036853 Ophiophagus hannah miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>chi-miR-29a-5p MIMAT0036112 Capra hircus miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>chi-miR-223-3p MIMAT0036072 Capra hircus miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>chi-miR-101-5p MIMAT0035899 Capra hircus miR-101-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>gsa-miR-9-3p MIMAT0035289 Gyrodactylus salaris miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 8 actgat 3
>efu-miR-223 MIMAT0035198 Eptesicus fuscus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 7 actgat 2
>eca-miR-8908a MIMAT0034713 Equus caballus miR-8908a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 6 actgat 1
>gra-miR8704 MIMAT0034252 Gossypium raimondii miR8704
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>pxy-miR-8547 MIMAT0033817 Plutella xylostella miR-8547
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 3 aactga 8
>ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 7 actgat 2
>ppc-miR-8266-5p MIMAT0033016 Pristionchus pacificus miR-8266-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 8 actgat 3
>ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>ssa-miR-29b-1-5p MIMAT0032585 Salmo salar miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>ssa-miR-181c-3p MIMAT0032426 Salmo salar miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>ssa-miR-101a-5p MIMAT0032280 Salmo salar miR-101a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>cpa-miR8147 MIMAT0031844 Carica papaya miR8147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>mmu-miR-8094 MIMAT0031395 Mus musculus miR-8094
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 1 aactga 6
>bdi-miR7716-5p MIMAT0030154 Brachypodium distachyon miR7716-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>mmu-miR-7651-3p MIMAT0029805 Mus musculus miR-7651-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>ipu-miR-29a MIMAT0029537 Ictalurus punctatus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>oan-miR-181b-2-3p MIMAT0031055 Ornithorhynchus anatinus
miR-181b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>mdo-miR-181b-2-3p MIMAT0031046 Monodelphis domestica
miR-181b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>mml-miR-7208-5p MIMAT0028382 Macaca mulatta miR-7208-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 1 aactga 6
>bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>mml-miR-873-3p MIMAT0027106 Macaca mulatta miR-873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>cgr-miR-29a-5p MIMAT0023883 Cricetulus griseus miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>ola-miR-223 MIMAT0022630 Oryzias latipes miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>ola-miR-101b-5p MIMAT0022605 Oryzias latipes miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>ola-miR-101a-5p MIMAT0022542 Oryzias latipes miR-101a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>tur-miR-34-3p MIMAT0023097 Tetranychus urticae miR-34-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>cin-miR-5612-5p MIMAT0022351 Ciona intestinalis miR-5612-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>aau-miR168 MIMAT0022678 Acacia auriculiformis miR168
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>aca-miR-223-3p MIMAT0021894 Anolis carolinensis miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>aca-miR-101-1-5p MIMAT0021710 Anolis carolinensis miR-101-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>hsa-miR-4724-5p MIMAT0019841 Homo sapiens miR-4724-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 1 aactga 6
>pma-miR-29a-5p MIMAT0019416 Petromyzon marinus miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>hsa-miR-3920 MIMAT0018195 Homo sapiens miR-3920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>tca-miR-3869-5p MIMAT0018830 Tribolium castaneum miR-3869-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>cin-miR-4056-5p MIMAT0016601 Ciona intestinalis miR-4056-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>tgu-miR-223 MIMAT0014599 Taeniopygia guttata miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>tgu-miR-29a-1-5p MIMAT0026990 Taeniopygia guttata miR-29a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>tgu-miR-101-2-5p MIMAT0014631 Taeniopygia guttata miR-101-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>osa-miR2870 MIMAT0013817 Oryza sativa miR2870
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 8 actgat 3
>eca-miR-223 MIMAT0013205 Equus caballus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>rno-miR-465-3p MIMAT0017367 Rattus norvegicus miR-465-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 8 actgat 3
>iltv-miR-I1-5p MIMAT0012723 Infectious laryngotracheitis
miR-I1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>bta-miR-2346 MIMAT0011881 Bos taurus miR-2346
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>cfa-miR-223 MIMAT0009852 Canis familiaris miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>bta-miR-223 MIMAT0009270 Bos taurus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>xla-miR-223 MIMAT0011144 Xenopus laevis miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mml-miR-181b-2-3p MIMAT0031042 Macaca mulatta miR-181b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>gga-miR-101-2-5p MIMAT0031077 Gallus gallus miR-101-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>oan-miR-223-3p MIMAT0007020 Ornithorhynchus anatinus miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>oan-miR-29a-1-5p MIMAT0006806 Ornithorhynchus anatinus
miR-29a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>pta-miR952b MIMAT0005014 Pinus taeda miR952b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 1 aactga 6
>ppt-miR899 MIMAT0004369 Physcomitrella patens miR899
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 1 aactga 6
>mdo-miR-223-3p MIMAT0004135 Monodelphis domestica miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mdo-miR-101-1-5p MIMAT0031076 Monodelphis domestica
miR-101-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactga 6
||||||
Sbjct: 3 aactga 8
>xtr-miR-223 MIMAT0003634 Xenopus tropicalis miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>hsa-miR-584-3p MIMAT0022708 Homo sapiens miR-584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>tni-miR-223 MIMAT0002895 Tetraodon nigroviridis miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>fru-miR-223 MIMAT0002894 Fugu rubripes miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>ppa-miR-223 MIMAT0002593 Pan paniscus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>sla-miR-223 MIMAT0002592 Saguinus labiatus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>ppy-miR-223 MIMAT0002591 Pongo pygmaeus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>ggo-miR-223 MIMAT0002590 Gorilla gorilla miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>ptr-miR-223 MIMAT0002589 Pan troglodytes miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mml-miR-223 MIMAT0002588 Macaca mulatta miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mml-miR-101-1-5p MIMAT0026581 Macaca mulatta miR-101-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>zma-miR393a-3p MIMAT0015207 Zea mays miR393a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 6 actgat 1
>dre-miR-223 MIMAT0001290 Danio rerio miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>gga-miR-181b-2-3p MIMAT0031059 Gallus gallus miR-181b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 3 actgat 8
>gga-miR-223 MIMAT0001140 Gallus gallus miR-223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>gga-miR-217-3p MIMAT0026513 Gallus gallus miR-217-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 actgat 7
||||||
Sbjct: 8 actgat 3
>rno-miR-223-3p MIMAT0000892 Rattus norvegicus miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>rno-miR-101a-5p MIMAT0004726 Rattus norvegicus miR-101a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>rno-miR-29a-5p MIMAT0004718 Rattus norvegicus miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>mmu-miR-223-3p MIMAT0000665 Mus musculus miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mmu-miR-29a-5p MIMAT0004631 Mus musculus miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
>hsa-miR-223-3p MIMAT0000280 Homo sapiens miR-223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 8 aactga 3
>mmu-miR-101a-5p MIMAT0004526 Mus musculus miR-101a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactga 6
||||||
Sbjct: 6 aactga 1
>hsa-miR-29a-5p MIMAT0004503 Homo sapiens miR-29a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 actgat 7
||||||
Sbjct: 1 actgat 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 131
Number of extensions: 120
Number of successful extensions: 95
Number of sequences better than 100.0: 95
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 95
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)