BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-32-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p 14 20
prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p 14 20
crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601 14 20
mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p 14 20
sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824 14 20
cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p 14 20
rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus miR-rL1... 14 20
cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a 14 20
dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster miR-2501-5p 14 20
lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990 14 20
hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990 14 20
gma-miR9750 MIMAT0036378 Glycine max miR9750 12 80
mse-miR-9571b MIMAT0035708 Manduca sexta miR-9571b 12 80
dvi-miR-1010-5p MIMAT0035556 Drosophila virilis miR-1010-5p 12 80
nve-miR-9415 MIMAT0035371 Nematostella vectensis miR-9415 12 80
gsa-miR-9396-5p MIMAT0035338 Gyrodactylus salaris miR-9396-5p 12 80
ppe-miR7125-3p MIMAT0031537 Prunus persica miR7125-3p 12 80
prd-miR-4816-5p MIMAT0030604 Panagrellus redivivus miR-4816-5p 12 80
prd-miR-7867-3p MIMAT0030473 Panagrellus redivivus miR-7867-3p 12 80
cbn-miR-7617 MIMAT0029656 Caenorhabditis brenneri miR-7617 12 80
sbi-miR5568c-3p MIMAT0026401 Sorghum bicolor miR5568c-3p 12 80
mdm-miR7125 MIMAT0026059 Malus domestica miR7125 12 80
mmu-miR-6380 MIMAT0025126 Mus musculus miR-6380 12 80
pgi-miR6135h MIMAT0027249 Panax ginseng miR6135h 12 80
pgi-miR6135g MIMAT0027248 Panax ginseng miR6135g 12 80
pgi-miR6135f MIMAT0027247 Panax ginseng miR6135f 12 80
pgi-miR6135e-5p MIMAT0027245 Panax ginseng miR6135e-5p 12 80
pgi-miR6135d MIMAT0027244 Panax ginseng miR6135d 12 80
pgi-miR6135c MIMAT0027243 Panax ginseng miR6135c 12 80
pgi-miR6135b MIMAT0027242 Panax ginseng miR6135b 12 80
pgi-miR6135a MIMAT0027241 Panax ginseng miR6135a 12 80
mtr-miR5758 MIMAT0023144 Medicago truncatula miR5758 12 80
mmu-miR-5617-5p MIMAT0022361 Mus musculus miR-5617-5p 12 80
cel-miR-4924 MIMAT0020130 Caenorhabditis elegans miR-4924 12 80
sko-miR-4839 MIMAT0020059 Saccoglossus kowalevskii miR-4839 12 80
cel-miR-4816-5p MIMAT0020005 Caenorhabditis elegans miR-4816-5p 12 80
oar-miR-668-5p MIMAT0019310 Ovis aries miR-668-5p 12 80
pab-miR3705 MIMAT0018137 Picea abies miR3705 12 80
cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p 12 80
cin-miR-4026-5p MIMAT0016542 Ciona intestinalis miR-4026-5p 12 80
cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p 12 80
cin-miR-1502d-3p MIMAT0016494 Ciona intestinalis miR-1502d-3p 12 80
bmo-miR-3406-5p MIMAT0015611 Bombyx mori miR-3406-5p 12 80
bmo-miR-3001 MIMAT0014665 Bombyx mori miR-3001 12 80
cte-miR-1990b MIMAT0013547 Capitella teleta miR-1990b 12 80
mtr-miR2650 MIMAT0013422 Medicago truncatula miR2650 12 80
dsi-miR-2494-5p MIMAT0012521 Drosophila simulans miR-2494-5p 12 80
dsi-miR-2579 MIMAT0012512 Drosophila simulans miR-2579 12 80
dsi-miR-1010-5p MIMAT0012463 Drosophila simulans miR-1010-5p 12 80
dps-miR-2549-5p MIMAT0012358 Drosophila pseudoobscura miR-2549-5p 12 80
dps-miR-2535-5p MIMAT0012324 Drosophila pseudoobscura miR-2535-5p 12 80
dps-miR-1010-5p MIMAT0012273 Drosophila pseudoobscura miR-1010-5p 12 80
dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p 12 80
dme-miR-2494-5p MIMAT0012202 Drosophila melanogaster miR-2494-5p 12 80
dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster miR-2489-5p 12 80
ptr-miR-600 MIMAT0008269 Pan troglodytes miR-600 12 80
ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a 12 80
oan-miR-1377 MIMAT0007107 Ornithorhynchus anatinus miR-1377 12 80
cel-miR-1020-5p MIMAT0020356 Caenorhabditis elegans miR-1020-5p 12 80
mmu-miR-467b-5p MIMAT0005448 Mus musculus miR-467b-5p 12 80
mmu-miR-668-5p MIMAT0017237 Mus musculus miR-668-5p 12 80
mmu-miR-216b-3p MIMAT0017233 Mus musculus miR-216b-3p 12 80
hsa-miR-600 MIMAT0003268 Homo sapiens miR-600 12 80
>prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacttac 7
|||||||
Sbjct: 2 aacttac 8
>cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus
miR-rL1-32-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aacttac 7
|||||||
Sbjct: 2 aacttac 8
>cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 8 aacttac 2
>dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster
miR-2501-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 7 aacttac 1
>lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 8 aacttac 2
>hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacttac 7
|||||||
Sbjct: 8 aacttac 2
>gma-miR9750 MIMAT0036378 Glycine max miR9750
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 7 acttac 2
>mse-miR-9571b MIMAT0035708 Manduca sexta miR-9571b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 8 aactta 3
>dvi-miR-1010-5p MIMAT0035556 Drosophila virilis miR-1010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>nve-miR-9415 MIMAT0035371 Nematostella vectensis miR-9415
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 3 acttac 8
>gsa-miR-9396-5p MIMAT0035338 Gyrodactylus salaris miR-9396-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>ppe-miR7125-3p MIMAT0031537 Prunus persica miR7125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactta 6
||||||
Sbjct: 3 aactta 8
>prd-miR-4816-5p MIMAT0030604 Panagrellus redivivus miR-4816-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>prd-miR-7867-3p MIMAT0030473 Panagrellus redivivus miR-7867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactta 6
||||||
Sbjct: 1 aactta 6
>cbn-miR-7617 MIMAT0029656 Caenorhabditis brenneri miR-7617
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>sbi-miR5568c-3p MIMAT0026401 Sorghum bicolor miR5568c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 1 acttac 6
>mdm-miR7125 MIMAT0026059 Malus domestica miR7125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactta 6
||||||
Sbjct: 3 aactta 8
>mmu-miR-6380 MIMAT0025126 Mus musculus miR-6380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 7 acttac 2
>pgi-miR6135h MIMAT0027249 Panax ginseng miR6135h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135g MIMAT0027248 Panax ginseng miR6135g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135f MIMAT0027247 Panax ginseng miR6135f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135e-5p MIMAT0027245 Panax ginseng miR6135e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135d MIMAT0027244 Panax ginseng miR6135d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135c MIMAT0027243 Panax ginseng miR6135c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135b MIMAT0027242 Panax ginseng miR6135b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>pgi-miR6135a MIMAT0027241 Panax ginseng miR6135a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>mtr-miR5758 MIMAT0023144 Medicago truncatula miR5758
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>mmu-miR-5617-5p MIMAT0022361 Mus musculus miR-5617-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>cel-miR-4924 MIMAT0020130 Caenorhabditis elegans miR-4924
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>sko-miR-4839 MIMAT0020059 Saccoglossus kowalevskii miR-4839
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>cel-miR-4816-5p MIMAT0020005 Caenorhabditis elegans miR-4816-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>oar-miR-668-5p MIMAT0019310 Ovis aries miR-668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>pab-miR3705 MIMAT0018137 Picea abies miR3705
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>cin-miR-4026-5p MIMAT0016542 Ciona intestinalis miR-4026-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>cin-miR-1502d-3p MIMAT0016494 Ciona intestinalis miR-1502d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 1 acttac 6
>bmo-miR-3406-5p MIMAT0015611 Bombyx mori miR-3406-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>bmo-miR-3001 MIMAT0014665 Bombyx mori miR-3001
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>cte-miR-1990b MIMAT0013547 Capitella teleta miR-1990b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>mtr-miR2650 MIMAT0013422 Medicago truncatula miR2650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aactta 6
||||||
Sbjct: 1 aactta 6
>dsi-miR-2494-5p MIMAT0012521 Drosophila simulans miR-2494-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dsi-miR-2579 MIMAT0012512 Drosophila simulans miR-2579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dsi-miR-1010-5p MIMAT0012463 Drosophila simulans miR-1010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dps-miR-2549-5p MIMAT0012358 Drosophila pseudoobscura
miR-2549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dps-miR-2535-5p MIMAT0012324 Drosophila pseudoobscura
miR-2535-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dps-miR-1010-5p MIMAT0012273 Drosophila pseudoobscura
miR-1010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>dme-miR-2494-5p MIMAT0012202 Drosophila melanogaster
miR-2494-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster
miR-2489-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>ptr-miR-600 MIMAT0008269 Pan troglodytes miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 1 acttac 6
>ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aactta 6
||||||
Sbjct: 6 aactta 1
>oan-miR-1377 MIMAT0007107 Ornithorhynchus anatinus miR-1377
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 8 acttac 3
>cel-miR-1020-5p MIMAT0020356 Caenorhabditis elegans miR-1020-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>mmu-miR-467b-5p MIMAT0005448 Mus musculus miR-467b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>mmu-miR-668-5p MIMAT0017237 Mus musculus miR-668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acttac 7
||||||
Sbjct: 6 acttac 1
>mmu-miR-216b-3p MIMAT0017233 Mus musculus miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 3 acttac 8
>hsa-miR-600 MIMAT0003268 Homo sapiens miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acttac 7
||||||
Sbjct: 1 acttac 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 86
Number of extensions: 75
Number of successful extensions: 63
Number of sequences better than 100.0: 63
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 63
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
