BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r87-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 14 20
aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p 14 20
gma-miR1520j MIMAT0018263 Glycine max miR1520j 14 20
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 14 20
tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p 12 80
bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p 12 80
nve-miR-9425 MIMAT0035384 Nematostella vectensis miR-9425 12 80
nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417 12 80
nve-miR-9416 MIMAT0035372 Nematostella vectensis miR-9416 12 80
eca-miR-9039 MIMAT0034581 Equus caballus miR-9039 12 80
eca-miR-8910 MIMAT0034438 Equus caballus miR-8910 12 80
cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835 12 80
sma-miR-8431-5p MIMAT0033566 Schistosoma mansoni miR-8431-5p 12 80
bbe-miR-219-3p MIMAT0031651 Branchiostoma belcheri miR-219-3p 12 80
bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p 12 80
ghr-miR7510b MIMAT0029163 Gossypium hirsutum miR7510b 12 80
mml-miR-4677-5p MIMAT0028306 Macaca mulatta miR-4677-5p 12 80
mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p 12 80
osa-miR5337b MIMAT0024870 Oryza sativa miR5337b 12 80
tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p 12 80
hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687 12 80
hsa-miR-5584-3p MIMAT0022284 Homo sapiens miR-5584-3p 12 80
aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p 12 80
aca-miR-196c-3p MIMAT0021833 Anolis carolinensis miR-196c-3p 12 80
mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a 12 80
hsa-miR-4677-5p MIMAT0019760 Homo sapiens miR-4677-5p 12 80
gma-miR4365 MIMAT0018264 Glycine max miR4365 12 80
mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus miR-M1-14-5p 12 80
mghv-miR-M1-10-5p MIMAT0018166 Mouse gammaherpesvirus miR-M1-10-5p 12 80
cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p 12 80
hsa-miR-3133 MIMAT0014998 Homo sapiens miR-3133 12 80
bmo-miR-2998 MIMAT0014659 Bombyx mori miR-2998 12 80
osa-miR2921 MIMAT0014052 Oryza sativa miR2921 12 80
bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p 12 80
dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p 12 80
ath-miR870-5p MIMAT0032025 Arabidopsis thaliana miR870-5p 12 80
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaacg 7
|||||||
Sbjct: 7 aagaacg 1
>aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaacg 7
|||||||
Sbjct: 8 aagaacg 2
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaacg 7
|||||||
Sbjct: 1 aagaacg 7
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaacg 7
|||||||
Sbjct: 7 aagaacg 1
>tae-miR9658-3p MIMAT0035766 Triticum aestivum miR9658-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>bra-miR9563b-5p MIMAT0035695 Brassica rapa miR9563b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>nve-miR-9425 MIMAT0035384 Nematostella vectensis miR-9425
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>nve-miR-9417 MIMAT0035373 Nematostella vectensis miR-9417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaacg 7
||||||
Sbjct: 3 agaacg 8
>nve-miR-9416 MIMAT0035372 Nematostella vectensis miR-9416
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>eca-miR-9039 MIMAT0034581 Equus caballus miR-9039
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>eca-miR-8910 MIMAT0034438 Equus caballus miR-8910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 3 aagaac 8
>cfa-miR-8835 MIMAT0034328 Canis familiaris miR-8835
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>sma-miR-8431-5p MIMAT0033566 Schistosoma mansoni miR-8431-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagaac 6
||||||
Sbjct: 6 aagaac 1
>bbe-miR-219-3p MIMAT0031651 Branchiostoma belcheri miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>bdi-miR7716-3p MIMAT0030155 Brachypodium distachyon miR7716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>ghr-miR7510b MIMAT0029163 Gossypium hirsutum miR7510b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>mml-miR-4677-5p MIMAT0028306 Macaca mulatta miR-4677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagaac 6
||||||
Sbjct: 8 aagaac 3
>mmu-miR-7086-3p MIMAT0028079 Mus musculus miR-7086-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>osa-miR5337b MIMAT0024870 Oryza sativa miR5337b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaacg 7
||||||
Sbjct: 3 agaacg 8
>tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 3 aagaac 8
>hsa-miR-5687 MIMAT0022478 Homo sapiens miR-5687
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaacg 7
||||||
Sbjct: 3 agaacg 8
>hsa-miR-5584-3p MIMAT0022284 Homo sapiens miR-5584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagaac 6
||||||
Sbjct: 8 aagaac 3
>aca-miR-5455-3p MIMAT0022082 Anolis carolinensis miR-5455-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagaac 6
||||||
Sbjct: 8 aagaac 3
>aca-miR-196c-3p MIMAT0021833 Anolis carolinensis miR-196c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 3 aagaac 8
>mtr-miR5274a MIMAT0021311 Medicago truncatula miR5274a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 6 agaacg 1
>hsa-miR-4677-5p MIMAT0019760 Homo sapiens miR-4677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagaac 6
||||||
Sbjct: 8 aagaac 3
>gma-miR4365 MIMAT0018264 Glycine max miR4365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>mghv-miR-M1-14-5p MIMAT0018174 Mouse gammaherpesvirus
miR-M1-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>mghv-miR-M1-10-5p MIMAT0018166 Mouse gammaherpesvirus
miR-M1-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 3 aagaac 8
>cin-miR-4000h-3p MIMAT0016441 Ciona intestinalis miR-4000h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>hsa-miR-3133 MIMAT0014998 Homo sapiens miR-3133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 3 aagaac 8
>bmo-miR-2998 MIMAT0014659 Bombyx mori miR-2998
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>osa-miR2921 MIMAT0014052 Oryza sativa miR2921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
>bta-miR-2397-5p MIMAT0011951 Bos taurus miR-2397-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaacg 7
||||||
Sbjct: 8 agaacg 3
>dvi-miR-6-3-5p MIMAT0032070 Drosophila virilis miR-6-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaacg 7
||||||
Sbjct: 3 agaacg 8
>ath-miR870-5p MIMAT0032025 Arabidopsis thaliana miR870-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagaac 6
||||||
Sbjct: 1 aagaac 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 76
Number of extensions: 72
Number of successful extensions: 36
Number of sequences better than 100.0: 36
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 36
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
