BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR9
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-5197-3p MIMAT0021131 Homo sapiens miR-5197-3p 16 6.9
aqc-miR477d MIMAT0012588 Aquilegia caerulea miR477d 16 6.9
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019 14 27
cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p 14 27
ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b 14 27
mmu-miR-6957-5p MIMAT0027814 Mus musculus miR-6957-5p 14 27
bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p 14 27
hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p 14 27
bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529 14 27
bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529 14 27
far-miR529 MIMAT0018373 Festuca arundinacea miR529 14 27
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p 14 27
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988 14 27
osa-miR2928 MIMAT0014059 Oryza sativa miR2928 14 27
zma-miR529-5p MIMAT0014030 Zea mays miR529-5p 14 27
aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529 14 27
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p 14 27
ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f 14 27
ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e 14 27
ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d 14 27
osa-miR529b MIMAT0005015 Oryza sativa miR529b 14 27
>hsa-miR-5197-3p MIMAT0021131 Homo sapiens miR-5197-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagaagag 8
||||||||
Sbjct: 1 aagaagag 8
>aqc-miR477d MIMAT0012588 Aquilegia caerulea miR477d
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aagaagag 8
||||||||
Sbjct: 8 aagaagag 1
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaaga 7
|||||||
Sbjct: 7 aagaaga 1
>ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagag 8
|||||||
Sbjct: 8 agaagag 2
>mmu-miR-6957-5p MIMAT0027814 Mus musculus miR-6957-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 2 agaagag 8
>bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaaga 7
|||||||
Sbjct: 7 aagaaga 1
>bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaaga 7
|||||||
Sbjct: 2 aagaaga 8
>bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaaga 7
|||||||
Sbjct: 2 aagaaga 8
>far-miR529 MIMAT0018373 Festuca arundinacea miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagag 8
|||||||
Sbjct: 8 agaagag 2
>osa-miR2928 MIMAT0014059 Oryza sativa miR2928
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaaga 7
|||||||
Sbjct: 1 aagaaga 7
>zma-miR529-5p MIMAT0014030 Zea mays miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaagag 8
|||||||
Sbjct: 8 agaagag 2
>ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
>osa-miR529b MIMAT0005015 Oryza sativa miR529b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaagag 8
|||||||
Sbjct: 1 agaagag 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 161
Number of successful extensions: 126
Number of sequences better than 100.0: 21
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
