BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s31
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-219-1-3p MIMAT0036842 Ophiophagus hannah miR-219-1-3p 16 6.9
aca-miR-219-1-3p MIMAT0021885 Anolis carolinensis miR-219-1-3p 16 6.9
sme-miR-219-3p MIMAT0012118 Schmidtea mediterranea miR-219-3p 16 6.9
ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p 14 27
chi-miR-502b-5p MIMAT0036266 Capra hircus miR-502b-5p 14 27
bdi-miR9493 MIMAT0035502 Brachypodium distachyon miR9493 14 27
ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p 14 27
ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p 14 27
bbe-miR-182a-3p MIMAT0031595 Branchiostoma belcheri miR-182a-3p 14 27
stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p 14 27
mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p 14 27
ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a 14 27
gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p 14 27
hsa-miR-5571-5p MIMAT0022257 Homo sapiens miR-5571-5p 14 27
osa-miR2275c MIMAT0022147 Oryza sativa miR2275c 14 27
bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a 14 27
dme-miR-4984-3p MIMAT0020220 Drosophila melanogaster miR-4984-3p 14 27
hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p 14 27
cin-miR-4003a-3p MIMAT0016462 Ciona intestinalis miR-4003a-3p 14 27
dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura miR-2545a-5p 14 27
bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p 14 27
ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p 14 27
cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p 14 27
mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p 14 27
ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447 14 27
oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p 14 27
mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica miR-219-1-3p 14 27
rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p 14 27
mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p 14 27
hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p 14 27
>oha-miR-219-1-3p MIMAT0036842 Ophiophagus hannah miR-219-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagaattg 8
||||||||
Sbjct: 1 aagaattg 8
>aca-miR-219-1-3p MIMAT0021885 Anolis carolinensis miR-219-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagaattg 8
||||||||
Sbjct: 1 aagaattg 8
>sme-miR-219-3p MIMAT0012118 Schmidtea mediterranea miR-219-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagaattg 8
||||||||
Sbjct: 1 aagaattg 8
>ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>chi-miR-502b-5p MIMAT0036266 Capra hircus miR-502b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaatt 7
|||||||
Sbjct: 8 aagaatt 2
>bdi-miR9493 MIMAT0035502 Brachypodium distachyon miR9493
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaatt 7
|||||||
Sbjct: 1 aagaatt 7
>ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>bbe-miR-182a-3p MIMAT0031595 Branchiostoma belcheri miR-182a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaatt 7
|||||||
Sbjct: 1 aagaatt 7
>stu-miR8033-3p MIMAT0031214 Solanum tuberosum miR8033-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaattg 8
|||||||
Sbjct: 8 agaattg 2
>mmu-miR-219b-3p MIMAT0029807 Mus musculus miR-219b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>gga-miR-6580-5p MIMAT0025667 Gallus gallus miR-6580-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>hsa-miR-5571-5p MIMAT0022257 Homo sapiens miR-5571-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaattg 8
|||||||
Sbjct: 7 agaattg 1
>osa-miR2275c MIMAT0022147 Oryza sativa miR2275c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaatt 7
|||||||
Sbjct: 1 aagaatt 7
>dme-miR-4984-3p MIMAT0020220 Drosophila melanogaster
miR-4984-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaatt 7
|||||||
Sbjct: 7 aagaatt 1
>hsa-miR-219b-3p MIMAT0019748 Homo sapiens miR-219b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>cin-miR-4003a-3p MIMAT0016462 Ciona intestinalis miR-4003a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaatt 7
|||||||
Sbjct: 2 aagaatt 8
>dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura
miR-2545a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaatt 7
|||||||
Sbjct: 7 aagaatt 1
>bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 2 agaattg 8
>oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica
miR-219-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
>hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaattg 8
|||||||
Sbjct: 1 agaattg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 141
Number of successful extensions: 121
Number of sequences better than 100.0: 30
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 30
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
