BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rgl-miR7797a MIMAT0032238 Rehmannia glutinosa miR7797a 16 6.9
osa-miR812s MIMAT0023267 Oryza sativa miR812s 16 6.9
osa-miR812j MIMAT0007850 Oryza sativa miR812j 16 6.9
osa-miR812i MIMAT0007849 Oryza sativa miR812i 16 6.9
osa-miR812h MIMAT0007848 Oryza sativa miR812h 16 6.9
osa-miR812g MIMAT0007847 Oryza sativa miR812g 16 6.9
chi-miR-340-3p MIMAT0036156 Capra hircus miR-340-3p 14 27
pxy-miR-184 MIMAT0033727 Plutella xylostella miR-184 14 27
ggo-miR-483 MIMAT0024191 Gorilla gorilla miR-483 14 27
cgr-miR-340-3p MIMAT0023921 Cricetulus griseus miR-340-3p 14 27
osa-miR5528 MIMAT0022163 Oryza sativa miR5528 14 27
gma-miR4374a MIMAT0018278 Glycine max miR4374a 14 27
gma-miR4368a MIMAT0018267 Glycine max miR4368a 14 27
gma-miR4345 MIMAT0018233 Glycine max miR4345 14 27
aly-miR168b-3p MIMAT0017484 Arabidopsis lyrata miR168b-3p 14 27
eca-miR-340-3p MIMAT0013067 Equus caballus miR-340-3p 14 27
bta-miR-340 MIMAT0009296 Bos taurus miR-340 14 27
mml-miR-340-3p MIMAT0026854 Macaca mulatta miR-340-3p 14 27
oan-miR-1410 MIMAT0007228 Ornithorhynchus anatinus miR-1410 14 27
rno-miR-483-5p MIMAT0017201 Rattus norvegicus miR-483-5p 14 27
mmu-miR-483-5p MIMAT0004782 Mus musculus miR-483-5p 14 27
hsa-miR-483-5p MIMAT0004761 Homo sapiens miR-483-5p 14 27
hsa-miR-340-3p MIMAT0000750 Homo sapiens miR-340-3p 14 27
mmu-miR-340-3p MIMAT0000586 Mus musculus miR-340-3p 14 27
rno-miR-340-3p MIMAT0000585 Rattus norvegicus miR-340-3p 14 27
ath-miR168b-3p MIMAT0031885 Arabidopsis thaliana miR168b-3p 14 27
>rgl-miR7797a MIMAT0032238 Rehmannia glutinosa miR7797a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>osa-miR812s MIMAT0023267 Oryza sativa miR812s
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>osa-miR812j MIMAT0007850 Oryza sativa miR812j
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>osa-miR812i MIMAT0007849 Oryza sativa miR812i
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>osa-miR812h MIMAT0007848 Oryza sativa miR812h
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>osa-miR812g MIMAT0007847 Oryza sativa miR812g
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagacgga 8
||||||||
Sbjct: 1 aagacgga 8
>chi-miR-340-3p MIMAT0036156 Capra hircus miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>pxy-miR-184 MIMAT0033727 Plutella xylostella miR-184
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agacgga 8
|||||||
Sbjct: 2 agacgga 8
>ggo-miR-483 MIMAT0024191 Gorilla gorilla miR-483
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>cgr-miR-340-3p MIMAT0023921 Cricetulus griseus miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>osa-miR5528 MIMAT0022163 Oryza sativa miR5528
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>gma-miR4374a MIMAT0018278 Glycine max miR4374a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 2 aagacgg 8
>gma-miR4368a MIMAT0018267 Glycine max miR4368a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>gma-miR4345 MIMAT0018233 Glycine max miR4345
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 2 aagacgg 8
>aly-miR168b-3p MIMAT0017484 Arabidopsis lyrata miR168b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagacgg 7
|||||||
Sbjct: 8 aagacgg 2
>eca-miR-340-3p MIMAT0013067 Equus caballus miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>bta-miR-340 MIMAT0009296 Bos taurus miR-340
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>mml-miR-340-3p MIMAT0026854 Macaca mulatta miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>oan-miR-1410 MIMAT0007228 Ornithorhynchus anatinus miR-1410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agacgga 8
|||||||
Sbjct: 2 agacgga 8
>rno-miR-483-5p MIMAT0017201 Rattus norvegicus miR-483-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>mmu-miR-483-5p MIMAT0004782 Mus musculus miR-483-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>hsa-miR-483-5p MIMAT0004761 Homo sapiens miR-483-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagacgg 7
|||||||
Sbjct: 1 aagacgg 7
>hsa-miR-340-3p MIMAT0000750 Homo sapiens miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>mmu-miR-340-3p MIMAT0000586 Mus musculus miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>rno-miR-340-3p MIMAT0000585 Rattus norvegicus miR-340-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agacgga 8
|||||||
Sbjct: 7 agacgga 1
>ath-miR168b-3p MIMAT0031885 Arabidopsis thaliana miR168b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagacgg 7
|||||||
Sbjct: 8 aagacgg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 211
Number of extensions: 179
Number of successful extensions: 164
Number of sequences better than 100.0: 26
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
