BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart17-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p 14 20
eca-miR-9159 MIMAT0034736 Equus caballus miR-9159 14 20
dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p 14 20
mdm-miR7121h MIMAT0026047 Malus domestica miR7121h 14 20
mdm-miR7121g MIMAT0026046 Malus domestica miR7121g 14 20
mdm-miR7121f MIMAT0026045 Malus domestica miR7121f 14 20
mdm-miR7121e MIMAT0026044 Malus domestica miR7121e 14 20
mdm-miR7121d MIMAT0026043 Malus domestica miR7121d 14 20
mdm-miR7121c MIMAT0026042 Malus domestica miR7121c 14 20
mdm-miR7121b MIMAT0026041 Malus domestica miR7121b 14 20
mdm-miR7121a MIMAT0026040 Malus domestica miR7121a 14 20
mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p 14 20
mmu-miR-6961-3p MIMAT0027823 Mus musculus miR-6961-3p 14 20
hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p 14 20
hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p 14 20
hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916 14 20
mml-miR-627-3p MIMAT0006473 Macaca mulatta miR-627-3p 14 20
gga-miR-1630 MIMAT0007501 Gallus gallus miR-1630 14 20
hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 14 20
ebv-miR-BART17-5p MIMAT0003715 Epstein Barr miR-BART17-5p 14 20
ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p 12 80
chi-miR-877-5p MIMAT0036300 Capra hircus miR-877-5p 12 80
chi-miR-1185-5p MIMAT0035915 Capra hircus miR-1185-5p 12 80
bra-miR395a-5p MIMAT0035850 Brassica rapa miR395a-5p 12 80
bra-miR395c-5p MIMAT0035848 Brassica rapa miR395c-5p 12 80
bra-miR395b-5p MIMAT0035846 Brassica rapa miR395b-5p 12 80
bra-miR395d-5p MIMAT0035844 Brassica rapa miR395d-5p 12 80
nve-miR-2041b-3p MIMAT0035382 Nematostella vectensis miR-2041b-3p 12 80
nve-miR-2041b MIMAT0035380 Nematostella vectensis miR-2041b 12 80
gsa-miR-9394b-5p MIMAT0035348 Gyrodactylus salaris miR-9394b-5p 12 80
efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202 12 80
efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g 12 80
eca-miR-9130 MIMAT0034681 Equus caballus miR-9130 12 80
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019 12 80
cfa-miR-8906 MIMAT0034434 Canis familiaris miR-8906 12 80
gra-miR8688 MIMAT0034061 Gossypium raimondii miR8688 12 80
ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p 12 80
ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p 12 80
bta-miR-7864 MIMAT0030449 Bos taurus miR-7864 12 80
rgl-miR7810 MIMAT0032256 Rehmannia glutinosa miR7810 12 80
mmu-miR-7650-5p MIMAT0029802 Mus musculus miR-7650-5p 12 80
mdo-miR-7285-5p MIMAT0028546 Monodelphis domestica miR-7285-5p 12 80
mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p 12 80
mmu-miR-7081-5p MIMAT0028068 Mus musculus miR-7081-5p 12 80
mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p 12 80
mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p 12 80
mmu-miR-6924-5p MIMAT0027748 Mus musculus miR-6924-5p 12 80
hsa-miR-6852-3p MIMAT0027605 Homo sapiens miR-6852-3p 12 80
hsa-miR-6847-5p MIMAT0027594 Homo sapiens miR-6847-5p 12 80
hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p 12 80
gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p 12 80
gga-miR-6583-5p MIMAT0025673 Gallus gallus miR-6583-5p 12 80
gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p 12 80
mml-miR-1185-5p MIMAT0024314 Macaca mulatta miR-1185-5p 12 80
ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202 12 80
ggo-miR-1185 MIMAT0024173 Gorilla gorilla miR-1185 12 80
ggo-miR-877 MIMAT0024155 Gorilla gorilla miR-877 12 80
ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044 12 80
bna-miR6031 MIMAT0023651 Brassica napus miR6031 12 80
mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p 12 80
aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2 12 80
rmi-miR-5328 MIMAT0021401 Rhipicephalus microplus miR-5328 12 80
mmu-miR-5113 MIMAT0020621 Mus musculus miR-5113 12 80
hsa-miR-4751 MIMAT0019888 Homo sapiens miR-4751 12 80
pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p 12 80
oar-miR-1185-5p MIMAT0019288 Ovis aries miR-1185-5p 12 80
hsa-miR-3909 MIMAT0018183 Homo sapiens miR-3909 12 80
ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253 12 80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 12 80
ppy-miR-1185 MIMAT0016148 Pongo pygmaeus miR-1185 12 80
ppy-miR-877 MIMAT0016117 Pongo pygmaeus miR-877 12 80
ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583 12 80
aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1 12 80
aly-miR395g-5p MIMAT0017665 Arabidopsis lyrata miR395g-5p 12 80
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p 12 80
aly-miR395e-5p MIMAT0017553 Arabidopsis lyrata miR395e-5p 12 80
tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p 12 80
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988 12 80
eca-miR-1185 MIMAT0013123 Equus caballus miR-1185 12 80
cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715 12 80
hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p 12 80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 12 80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 12 80
bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p 12 80
bta-miR-1185 MIMAT0009973 Bos taurus miR-1185 12 80
nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p 12 80
bta-miR-877 MIMAT0009381 Bos taurus miR-877 12 80
ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583 12 80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 12 80
ptr-miR-1185 MIMAT0007953 Pan troglodytes miR-1185 12 80
cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841 12 80
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p 12 80
mml-miR-877-5p MIMAT0006521 Macaca mulatta miR-877-5p 12 80
mml-miR-583 MIMAT0006445 Macaca mulatta miR-583 12 80
gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650 12 80
oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus miR-1355-3p 12 80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 12 80
mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1 12 80
rno-miR-877 MIMAT0005285 Rattus norvegicus miR-877 12 80
hsa-miR-877-5p MIMAT0004949 Homo sapiens miR-877-5p 12 80
mmu-miR-877-3p MIMAT0004862 Mus musculus miR-877-3p 12 80
mmu-miR-877-5p MIMAT0004861 Mus musculus miR-877-5p 12 80
mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p 12 80
hsa-miR-1185-5p MIMAT0005798 Homo sapiens miR-1185-5p 12 80
hsa-miR-583 MIMAT0003248 Homo sapiens miR-583 12 80
gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p 12 80
rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p 12 80
>chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>eca-miR-9159 MIMAT0034736 Equus caballus miR-9159
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121h MIMAT0026047 Malus domestica miR7121h
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121g MIMAT0026046 Malus domestica miR7121g
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121f MIMAT0026045 Malus domestica miR7121f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121e MIMAT0026044 Malus domestica miR7121e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121d MIMAT0026043 Malus domestica miR7121d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121c MIMAT0026042 Malus domestica miR7121c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121b MIMAT0026041 Malus domestica miR7121b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121a MIMAT0026040 Malus domestica miR7121a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagagga 7
|||||||
Sbjct: 1 aagagga 7
>mmu-miR-6961-3p MIMAT0027823 Mus musculus miR-6961-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 8 aagagga 2
>hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagagga 7
|||||||
Sbjct: 1 aagagga 7
>hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagagga 7
|||||||
Sbjct: 1 aagagga 7
>mml-miR-627-3p MIMAT0006473 Macaca mulatta miR-627-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>gga-miR-1630 MIMAT0007501 Gallus gallus miR-1630
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagagga 7
|||||||
Sbjct: 2 aagagga 8
>hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagagga 7
|||||||
Sbjct: 7 aagagga 1
>ebv-miR-BART17-5p MIMAT0003715 Epstein Barr miR-BART17-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagagga 7
|||||||
Sbjct: 2 aagagga 8
>ssc-miR-9788-3p MIMAT0037005 Sus scrofa miR-9788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>chi-miR-877-5p MIMAT0036300 Capra hircus miR-877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>chi-miR-1185-5p MIMAT0035915 Capra hircus miR-1185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>bra-miR395a-5p MIMAT0035850 Brassica rapa miR395a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>bra-miR395c-5p MIMAT0035848 Brassica rapa miR395c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>bra-miR395b-5p MIMAT0035846 Brassica rapa miR395b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>bra-miR395d-5p MIMAT0035844 Brassica rapa miR395d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>nve-miR-2041b-3p MIMAT0035382 Nematostella vectensis
miR-2041b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>nve-miR-2041b MIMAT0035380 Nematostella vectensis miR-2041b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>gsa-miR-9394b-5p MIMAT0035348 Gyrodactylus salaris miR-9394b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>eca-miR-9130 MIMAT0034681 Equus caballus miR-9130
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>cfa-miR-8906 MIMAT0034434 Canis familiaris miR-8906
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 6 agagga 1
>gra-miR8688 MIMAT0034061 Gossypium raimondii miR8688
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>bta-miR-7864 MIMAT0030449 Bos taurus miR-7864
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>rgl-miR7810 MIMAT0032256 Rehmannia glutinosa miR7810
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>mmu-miR-7650-5p MIMAT0029802 Mus musculus miR-7650-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>mdo-miR-7285-5p MIMAT0028546 Monodelphis domestica miR-7285-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>mmu-miR-7081-5p MIMAT0028068 Mus musculus miR-7081-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>mmu-miR-6924-5p MIMAT0027748 Mus musculus miR-6924-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>hsa-miR-6852-3p MIMAT0027605 Homo sapiens miR-6852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>hsa-miR-6847-5p MIMAT0027594 Homo sapiens miR-6847-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>gga-miR-6583-5p MIMAT0025673 Gallus gallus miR-6583-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>gga-miR-6570-3p MIMAT0025648 Gallus gallus miR-6570-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>mml-miR-1185-5p MIMAT0024314 Macaca mulatta miR-1185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>ggo-miR-1185 MIMAT0024173 Gorilla gorilla miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>ggo-miR-877 MIMAT0024155 Gorilla gorilla miR-877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>bna-miR6031 MIMAT0023651 Brassica napus miR6031
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>rmi-miR-5328 MIMAT0021401 Rhipicephalus microplus miR-5328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>mmu-miR-5113 MIMAT0020621 Mus musculus miR-5113
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>hsa-miR-4751 MIMAT0019888 Homo sapiens miR-4751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>oar-miR-1185-5p MIMAT0019288 Ovis aries miR-1185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>hsa-miR-3909 MIMAT0018183 Homo sapiens miR-3909
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>ppy-miR-1253 MIMAT0016178 Pongo pygmaeus miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>ppy-miR-1185 MIMAT0016148 Pongo pygmaeus miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>ppy-miR-877 MIMAT0016117 Pongo pygmaeus miR-877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>aly-miR395g-5p MIMAT0017665 Arabidopsis lyrata miR395g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>aly-miR395e-5p MIMAT0017553 Arabidopsis lyrata miR395e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>eca-miR-1185 MIMAT0013123 Equus caballus miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>bta-miR-2454-3p MIMAT0012036 Bos taurus miR-2454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>bta-miR-1185 MIMAT0009973 Bos taurus miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>bta-miR-877 MIMAT0009381 Bos taurus miR-877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>ptr-miR-1185 MIMAT0007953 Pan troglodytes miR-1185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mml-miR-877-5p MIMAT0006521 Macaca mulatta miR-877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>mml-miR-583 MIMAT0006445 Macaca mulatta miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>gga-miR-1650 MIMAT0007528 Gallus gallus miR-1650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 6 agagga 1
>oan-miR-1355-3p MIMAT0006952 Ornithorhynchus anatinus
miR-1355-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mcmv-miR-m01-1 MIMAT0005533 Mouse cytomegalovirus miR-m01-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>rno-miR-877 MIMAT0005285 Rattus norvegicus miR-877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>hsa-miR-877-5p MIMAT0004949 Homo sapiens miR-877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>mmu-miR-877-3p MIMAT0004862 Mus musculus miR-877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>mmu-miR-877-5p MIMAT0004861 Mus musculus miR-877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 3 agagga 8
>mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
>hsa-miR-1185-5p MIMAT0005798 Homo sapiens miR-1185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agagga 7
||||||
Sbjct: 1 agagga 6
>hsa-miR-583 MIMAT0003248 Homo sapiens miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agagga 7
||||||
Sbjct: 8 agagga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 146
Number of extensions: 126
Number of successful extensions: 107
Number of sequences better than 100.0: 107
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 107
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
