BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s37
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p 16 6.9
hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p 16 6.9
oha-miR-202-3p MIMAT0036809 Ophiophagus hannah miR-202-3p 14 27
chi-miR-2290 MIMAT0036081 Capra hircus miR-2290 14 27
cfa-miR-8876 MIMAT0034376 Canis familiaris miR-8876 14 27
cfa-miR-8870 MIMAT0034367 Canis familiaris miR-8870 14 27
ssa-miR-202-5p MIMAT0032482 Salmo salar miR-202-5p 14 27
ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p 14 27
gga-miR-6579-3p MIMAT0025666 Gallus gallus miR-6579-3p 14 27
ppe-miR6293 MIMAT0027329 Prunus persica miR6293 14 27
ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044 14 27
aca-miR-202-3p.1 MIMAT0021850 Anolis carolinensis miR-202-3p.1 14 27
pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p 14 27
hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p 14 27
smo-miR1096 MIMAT0005252 Selaginella moellendorffii miR1096 14 27
gga-miR-202-3p MIMAT0003355 Gallus gallus miR-202-3p 14 27
tni-miR-202 MIMAT0003074 Tetraodon nigroviridis miR-202 14 27
fru-miR-202 MIMAT0003073 Fugu rubripes miR-202 14 27
dre-miR-202-3p MIMAT0001864 Danio rerio miR-202-3p 14 27
>mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aagaggca 8
||||||||
Sbjct: 8 aagaggca 1
>hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aagaggca 8
||||||||
Sbjct: 8 aagaggca 1
>oha-miR-202-3p MIMAT0036809 Ophiophagus hannah miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>chi-miR-2290 MIMAT0036081 Capra hircus miR-2290
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaggca 8
|||||||
Sbjct: 8 agaggca 2
>cfa-miR-8876 MIMAT0034376 Canis familiaris miR-8876
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaggca 8
|||||||
Sbjct: 8 agaggca 2
>cfa-miR-8870 MIMAT0034367 Canis familiaris miR-8870
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaggca 8
|||||||
Sbjct: 7 agaggca 1
>ssa-miR-202-5p MIMAT0032482 Salmo salar miR-202-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaggc 7
|||||||
Sbjct: 2 aagaggc 8
>ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaggc 7
|||||||
Sbjct: 8 aagaggc 2
>gga-miR-6579-3p MIMAT0025666 Gallus gallus miR-6579-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>ppe-miR6293 MIMAT0027329 Prunus persica miR6293
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaggc 7
|||||||
Sbjct: 2 aagaggc 8
>ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagaggc 7
|||||||
Sbjct: 1 aagaggc 7
>aca-miR-202-3p.1 MIMAT0021850 Anolis carolinensis miR-202-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaggc 7
|||||||
Sbjct: 8 aagaggc 2
>hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagaggc 7
|||||||
Sbjct: 8 aagaggc 2
>smo-miR1096 MIMAT0005252 Selaginella moellendorffii miR1096
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agaggca 8
|||||||
Sbjct: 8 agaggca 2
>gga-miR-202-3p MIMAT0003355 Gallus gallus miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>tni-miR-202 MIMAT0003074 Tetraodon nigroviridis miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>fru-miR-202 MIMAT0003073 Fugu rubripes miR-202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
>dre-miR-202-3p MIMAT0001864 Danio rerio miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agaggca 8
|||||||
Sbjct: 1 agaggca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 163
Number of successful extensions: 124
Number of sequences better than 100.0: 19
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
