BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-181b-3p MIMAT0036763 Ophiophagus hannah miR-181b-3p 12 80
efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202 12 80
efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g 12 80
efu-miR-9242 MIMAT0034825 Eptesicus fuscus miR-9242 12 80
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019 12 80
gra-miR7494b MIMAT0034062 Gossypium raimondii miR7494b 12 80
ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p 12 80
ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p 12 80
ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p 12 80
mdo-miR-7362-3p MIMAT0028737 Monodelphis domestica miR-7362-3p 12 80
mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p 12 80
mmu-miR-7041-5p MIMAT0027986 Mus musculus miR-7041-5p 12 80
mmu-miR-7039-5p MIMAT0027982 Mus musculus miR-7039-5p 12 80
mmu-miR-7031-3p MIMAT0027967 Mus musculus miR-7031-3p 12 80
mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p 12 80
mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p 12 80
mmu-miR-6965-5p MIMAT0027830 Mus musculus miR-6965-5p 12 80
mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p 12 80
hsa-miR-6892-3p MIMAT0027685 Homo sapiens miR-6892-3p 12 80
hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p 12 80
hsa-miR-6769b-3p MIMAT0027621 Homo sapiens miR-6769b-3p 12 80
hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p 12 80
bta-miR-6528 MIMAT0025562 Bos taurus miR-6528 12 80
ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202 12 80
ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044 12 80
bna-miR6031 MIMAT0023651 Brassica napus miR6031 12 80
hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p 12 80
mmu-miR-5627-5p MIMAT0022385 Mus musculus miR-5627-5p 12 80
aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2 12 80
hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p 12 80
pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p 12 80
hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916 12 80
pab-miR3693 MIMAT0018125 Picea abies miR3693 12 80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 12 80
ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583 12 80
aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1 12 80
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p 12 80
tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p 12 80
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988 12 80
hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p 12 80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 12 80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 12 80
bta-miR-2368-5p MIMAT0011911 Bos taurus miR-2368-5p 12 80
nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p 12 80
ptr-miR-642 MIMAT0008296 Pan troglodytes miR-642 12 80
ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583 12 80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 12 80
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p 12 80
mml-miR-642 MIMAT0006483 Macaca mulatta miR-642 12 80
mml-miR-583 MIMAT0006445 Macaca mulatta miR-583 12 80
gga-miR-1699 MIMAT0007591 Gallus gallus miR-1699 12 80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 12 80
cre-miR1150.1 MIMAT0005392 Chlamydomonas reinhardtii miR1150.1 12 80
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853 12 80
hsa-miR-642a-5p MIMAT0003312 Homo sapiens miR-642a-5p 12 80
hsa-miR-583 MIMAT0003248 Homo sapiens miR-583 12 80
mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus miR-M1-2-5p 12 80
gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p 12 80
>oha-miR-181b-3p MIMAT0036763 Ophiophagus hannah miR-181b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 6 agaggg 1
>efu-miR-202 MIMAT0035057 Eptesicus fuscus miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>efu-miR-9189g MIMAT0034885 Eptesicus fuscus miR-9189g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>efu-miR-9242 MIMAT0034825 Eptesicus fuscus miR-9242
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 7 agaggg 2
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>gra-miR7494b MIMAT0034062 Gossypium raimondii miR7494b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>ssa-miR-8158-5p MIMAT0032740 Salmo salar miR-8158-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>ssa-miR-103-5p MIMAT0032284 Salmo salar miR-103-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>mdo-miR-7362-3p MIMAT0028737 Monodelphis domestica miR-7362-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 3 agaggg 8
>mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>mmu-miR-7041-5p MIMAT0027986 Mus musculus miR-7041-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>mmu-miR-7039-5p MIMAT0027982 Mus musculus miR-7039-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>mmu-miR-7031-3p MIMAT0027967 Mus musculus miR-7031-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 8 agaggg 3
>mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>mmu-miR-7014-3p MIMAT0027933 Mus musculus miR-7014-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mmu-miR-6965-5p MIMAT0027830 Mus musculus miR-6965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>mmu-miR-6963-3p MIMAT0027827 Mus musculus miR-6963-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>hsa-miR-6892-3p MIMAT0027685 Homo sapiens miR-6892-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 7 agaggg 2
>hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>hsa-miR-6769b-3p MIMAT0027621 Homo sapiens miR-6769b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 6 agaggg 1
>hsa-miR-6781-3p MIMAT0027463 Homo sapiens miR-6781-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>bta-miR-6528 MIMAT0025562 Bos taurus miR-6528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>ggo-miR-202 MIMAT0024297 Gorilla gorilla miR-202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>ame-miR-6044 MIMAT0023666 Apis mellifera miR-6044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>bna-miR6031 MIMAT0023651 Brassica napus miR6031
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>mmu-miR-5627-5p MIMAT0022385 Mus musculus miR-5627-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>aca-miR-202-5p.2 MIMAT0021849 Anolis carolinensis miR-202-5p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 6 agaggg 1
>pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 1 aagagg 6
>pab-miR3693 MIMAT0018125 Picea abies miR3693
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>ppy-miR-583 MIMAT0016026 Pongo pygmaeus miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>tgu-miR-130b-5p MIMAT0014646 Taeniopygia guttata miR-130b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>hsa-miR-2682-3p MIMAT0013518 Homo sapiens miR-2682-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 8 aagagg 3
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>bta-miR-2368-5p MIMAT0011911 Bos taurus miR-2368-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>nve-miR-2030-3p MIMAT0009781 Nematostella vectensis miR-2030-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>ptr-miR-642 MIMAT0008296 Pan troglodytes miR-642
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 8 agaggg 3
>ptr-miR-583 MIMAT0008256 Pan troglodytes miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>mml-miR-642 MIMAT0006483 Macaca mulatta miR-642
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 8 agaggg 3
>mml-miR-583 MIMAT0006445 Macaca mulatta miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>gga-miR-1699 MIMAT0007591 Gallus gallus miR-1699
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 3 agaggg 8
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
>cre-miR1150.1 MIMAT0005392 Chlamydomonas reinhardtii miR1150.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 8 agaggg 3
>hsa-miR-642a-5p MIMAT0003312 Homo sapiens miR-642a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agaggg 7
||||||
Sbjct: 8 agaggg 3
>hsa-miR-583 MIMAT0003248 Homo sapiens miR-583
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagagg 6
||||||
Sbjct: 3 aagagg 8
>mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus
miR-M1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agaggg 7
||||||
Sbjct: 1 agaggg 6
>gga-miR-130b-5p MIMAT0026530 Gallus gallus miR-130b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagagg 6
||||||
Sbjct: 6 aagagg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 86
Number of extensions: 86
Number of successful extensions: 58
Number of sequences better than 100.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
