BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hhv6b-miR-Ro6-1-5p MIMAT0023510 Human herpesvirus miR-Ro6-1-5p 16 6.9
ppc-miR-8245b-5p MIMAT0033186 Pristionchus pacificus miR-8245b-5p 14 27
mmu-miR-7680-3p MIMAT0029875 Mus musculus miR-7680-3p 14 27
mmu-miR-7230-5p MIMAT0028428 Mus musculus miR-7230-5p 14 27
tca-miR-6008-5p MIMAT0023557 Tribolium castaneum miR-6008-5p 14 27
hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b 14 27
hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p 14 27
hsa-miR-4274 MIMAT0016906 Homo sapiens miR-4274 14 27
mmu-miR-3105-3p MIMAT0014942 Mus musculus miR-3105-3p 14 27
gga-miR-1567 MIMAT0007427 Gallus gallus miR-1567 14 27
cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p 14 27
cel-miR-244-3p MIMAT0015118 Caenorhabditis elegans miR-244-3p 14 27
>hhv6b-miR-Ro6-1-5p MIMAT0023510 Human herpesvirus miR-Ro6-1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagcagtc 8
||||||||
Sbjct: 1 aagcagtc 8
>ppc-miR-8245b-5p MIMAT0033186 Pristionchus pacificus
miR-8245b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtc 8
|||||||
Sbjct: 8 agcagtc 2
>mmu-miR-7680-3p MIMAT0029875 Mus musculus miR-7680-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 7 aagcagt 1
>mmu-miR-7230-5p MIMAT0028428 Mus musculus miR-7230-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtc 8
|||||||
Sbjct: 8 agcagtc 2
>tca-miR-6008-5p MIMAT0023557 Tribolium castaneum miR-6008-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtc 8
|||||||
Sbjct: 7 agcagtc 1
>hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 8 aagcagt 2
>hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 8 aagcagt 2
>hsa-miR-4274 MIMAT0016906 Homo sapiens miR-4274
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcagtc 8
|||||||
Sbjct: 2 agcagtc 8
>mmu-miR-3105-3p MIMAT0014942 Mus musculus miR-3105-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 7 aagcagt 1
>gga-miR-1567 MIMAT0007427 Gallus gallus miR-1567
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtc 8
|||||||
Sbjct: 7 agcagtc 1
>cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 8 aagcagt 2
>cel-miR-244-3p MIMAT0015118 Caenorhabditis elegans miR-244-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagcagt 7
|||||||
Sbjct: 8 aagcagt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 142
Number of extensions: 129
Number of successful extensions: 96
Number of sequences better than 100.0: 12
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
