BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-10
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-9549-3p MIMAT0035643 Drosophila virilis miR-9549-3p 14 20
mdo-miR-7386h-3p MIMAT0028841 Monodelphis domestica miR-7386h-3p 14 20
mmu-miR-6962-5p MIMAT0027824 Mus musculus miR-6962-5p 14 20
hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p 14 20
bta-miR-2285q MIMAT0025574 Bos taurus miR-2285q 14 20
cin-miR-4075-5p MIMAT0016638 Ciona intestinalis miR-4075-5p 14 20
cre-miR1160.3 MIMAT0005412 Chlamydomonas reinhardtii miR1160.3 14 20
ssc-miR-9829-5p MIMAT0037047 Sus scrofa miR-9829-5p 12 80
nve-miR-9459 MIMAT0035420 Nematostella vectensis miR-9459 12 80
eca-miR-1543 MIMAT0034733 Equus caballus miR-1543 12 80
eca-miR-9148 MIMAT0034724 Equus caballus miR-9148 12 80
eca-miR-9095 MIMAT0034641 Equus caballus miR-9095 12 80
eca-miR-9075 MIMAT0034620 Equus caballus miR-9075 12 80
atr-miR8589 MIMAT0033876 Amborella trichopoda miR8589 12 80
stu-miR8010 MIMAT0030906 Solanum tuberosum miR8010 12 80
cbn-miR-7579 MIMAT0029650 Caenorhabditis brenneri miR-7579 12 80
crm-miR-7579 MIMAT0029610 Caenorhabditis remanei miR-7579 12 80
cbr-miR-7579 MIMAT0029580 Caenorhabditis briggsae miR-7579 12 80
mdo-miR-7356-3p MIMAT0028725 Monodelphis domestica miR-7356-3p 12 80
mdo-miR-7258-5p MIMAT0028482 Monodelphis domestica miR-7258-5p 12 80
mmu-miR-7238-3p MIMAT0028445 Mus musculus miR-7238-3p 12 80
mml-miR-7181-5p MIMAT0028308 Macaca mulatta miR-7181-5p 12 80
mmu-miR-6899-3p MIMAT0027699 Mus musculus miR-6899-3p 12 80
gga-miR-6603-3p MIMAT0025697 Gallus gallus miR-6603-3p 12 80
gga-miR-6570-5p MIMAT0025647 Gallus gallus miR-6570-5p 12 80
gma-miR2111d MIMAT0023224 Glycine max miR2111d 12 80
gma-miR2111a MIMAT0022457 Glycine max miR2111a 12 80
tae-miR5085 MIMAT0020567 Triticum aestivum miR5085 12 80
hsa-miR-4751 MIMAT0019888 Homo sapiens miR-4751 12 80
gma-miR4368b MIMAT0018269 Glycine max miR4368b 12 80
cin-miR-4006e-3p MIMAT0016481 Ciona intestinalis miR-4006e-3p 12 80
cin-miR-4000b-1-3p MIMAT0016433 Ciona intestinalis miR-4000b-1-3p 12 80
cin-miR-4000d-3p MIMAT0016429 Ciona intestinalis miR-4000d-3p 12 80
lja-miR2111-3p MIMAT0016367 Lotus japonicus miR2111-3p 12 80
ppy-miR-492 MIMAT0015913 Pongo pygmaeus miR-492 12 80
aly-miR844-5p MIMAT0017629 Arabidopsis lyrata miR844-5p 12 80
dsi-miR-2577 MIMAT0012509 Drosophila simulans miR-2577 12 80
mmu-miR-1933-3p MIMAT0009397 Mus musculus miR-1933-3p 12 80
ptr-miR-492 MIMAT0008167 Pan troglodytes miR-492 12 80
mml-miR-492 MIMAT0006354 Macaca mulatta miR-492 12 80
gga-miR-1750 MIMAT0007657 Gallus gallus miR-1750 12 80
gga-miR-1456-5p MIMAT0007333 Gallus gallus miR-1456-5p 12 80
hsa-miR-659-5p MIMAT0022710 Homo sapiens miR-659-5p 12 80
hsa-miR-492 MIMAT0002812 Homo sapiens miR-492 12 80
ptc-miR481d MIMAT0002102 Populus trichocarpa miR481d 12 80
ptc-miR481c MIMAT0002100 Populus trichocarpa miR481c 12 80
ptc-miR481b MIMAT0002099 Populus trichocarpa miR481b 12 80
ptc-miR481a MIMAT0002098 Populus trichocarpa miR481a 12 80
mmu-miR-211-3p MIMAT0017059 Mus musculus miR-211-3p 12 80
>dvi-miR-9549-3p MIMAT0035643 Drosophila virilis miR-9549-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 1 aaggacc 7
>mdo-miR-7386h-3p MIMAT0028841 Monodelphis domestica
miR-7386h-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 2 aaggacc 8
>mmu-miR-6962-5p MIMAT0027824 Mus musculus miR-6962-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 1 aaggacc 7
>hsa-miR-6816-3p MIMAT0027533 Homo sapiens miR-6816-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 2 aaggacc 8
>bta-miR-2285q MIMAT0025574 Bos taurus miR-2285q
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 1 aaggacc 7
>cin-miR-4075-5p MIMAT0016638 Ciona intestinalis miR-4075-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggacc 7
|||||||
Sbjct: 7 aaggacc 1
>cre-miR1160.3 MIMAT0005412 Chlamydomonas reinhardtii miR1160.3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggacc 7
|||||||
Sbjct: 1 aaggacc 7
>ssc-miR-9829-5p MIMAT0037047 Sus scrofa miR-9829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>nve-miR-9459 MIMAT0035420 Nematostella vectensis miR-9459
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 1 aaggac 6
>eca-miR-1543 MIMAT0034733 Equus caballus miR-1543
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacc 7
||||||
Sbjct: 8 aggacc 3
>eca-miR-9148 MIMAT0034724 Equus caballus miR-9148
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>eca-miR-9095 MIMAT0034641 Equus caballus miR-9095
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 3 aaggac 8
>eca-miR-9075 MIMAT0034620 Equus caballus miR-9075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>atr-miR8589 MIMAT0033876 Amborella trichopoda miR8589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>stu-miR8010 MIMAT0030906 Solanum tuberosum miR8010
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>cbn-miR-7579 MIMAT0029650 Caenorhabditis brenneri miR-7579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>crm-miR-7579 MIMAT0029610 Caenorhabditis remanei miR-7579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>cbr-miR-7579 MIMAT0029580 Caenorhabditis briggsae miR-7579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>mdo-miR-7356-3p MIMAT0028725 Monodelphis domestica miR-7356-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacc 7
||||||
Sbjct: 8 aggacc 3
>mdo-miR-7258-5p MIMAT0028482 Monodelphis domestica miR-7258-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 3 aaggac 8
>mmu-miR-7238-3p MIMAT0028445 Mus musculus miR-7238-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 8 aaggac 3
>mml-miR-7181-5p MIMAT0028308 Macaca mulatta miR-7181-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacc 7
||||||
Sbjct: 8 aggacc 3
>mmu-miR-6899-3p MIMAT0027699 Mus musculus miR-6899-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 8 aaggac 3
>gga-miR-6603-3p MIMAT0025697 Gallus gallus miR-6603-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 1 aaggac 6
>gga-miR-6570-5p MIMAT0025647 Gallus gallus miR-6570-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>gma-miR2111d MIMAT0023224 Glycine max miR2111d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>gma-miR2111a MIMAT0022457 Glycine max miR2111a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>tae-miR5085 MIMAT0020567 Triticum aestivum miR5085
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 1 aaggac 6
>hsa-miR-4751 MIMAT0019888 Homo sapiens miR-4751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>gma-miR4368b MIMAT0018269 Glycine max miR4368b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 1 aaggac 6
>cin-miR-4006e-3p MIMAT0016481 Ciona intestinalis miR-4006e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>cin-miR-4000b-1-3p MIMAT0016433 Ciona intestinalis
miR-4000b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>cin-miR-4000d-3p MIMAT0016429 Ciona intestinalis miR-4000d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>lja-miR2111-3p MIMAT0016367 Lotus japonicus miR2111-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggac 6
||||||
Sbjct: 6 aaggac 1
>ppy-miR-492 MIMAT0015913 Pongo pygmaeus miR-492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>aly-miR844-5p MIMAT0017629 Arabidopsis lyrata miR844-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 3 aaggac 8
>dsi-miR-2577 MIMAT0012509 Drosophila simulans miR-2577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>mmu-miR-1933-3p MIMAT0009397 Mus musculus miR-1933-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>ptr-miR-492 MIMAT0008167 Pan troglodytes miR-492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>mml-miR-492 MIMAT0006354 Macaca mulatta miR-492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>gga-miR-1750 MIMAT0007657 Gallus gallus miR-1750
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 3 aggacc 8
>gga-miR-1456-5p MIMAT0007333 Gallus gallus miR-1456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 3 aaggac 8
>hsa-miR-659-5p MIMAT0022710 Homo sapiens miR-659-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>hsa-miR-492 MIMAT0002812 Homo sapiens miR-492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>ptc-miR481d MIMAT0002102 Populus trichocarpa miR481d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>ptc-miR481c MIMAT0002100 Populus trichocarpa miR481c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>ptc-miR481b MIMAT0002099 Populus trichocarpa miR481b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>ptc-miR481a MIMAT0002098 Populus trichocarpa miR481a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacc 7
||||||
Sbjct: 1 aggacc 6
>mmu-miR-211-3p MIMAT0017059 Mus musculus miR-211-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggac 6
||||||
Sbjct: 3 aaggac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 57
Number of successful extensions: 49
Number of sequences better than 100.0: 49
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 49
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
