BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART2-3p MIMAT0004744 Epstein Barr miR-BART2-3p 16 6.9
tch-miR-708-5p MIMAT0036587 Tupaia chinensis miR-708-5p 14 27
tch-miR-28-5p MIMAT0036565 Tupaia chinensis miR-28-5p 14 27
chi-miR-708-5p MIMAT0036290 Capra hircus miR-708-5p 14 27
chi-miR-28-5p MIMAT0036109 Capra hircus miR-28-5p 14 27
efu-miR-28 MIMAT0034949 Eptesicus fuscus miR-28 14 27
ssc-miR-7144-3p MIMAT0028164 Sus scrofa miR-7144-3p 14 27
gga-miR-6648-5p MIMAT0025746 Gallus gallus miR-6648-5p 14 27
gga-miR-6606-5p MIMAT0025700 Gallus gallus miR-6606-5p 14 27
gga-miR-6546-5p MIMAT0025595 Gallus gallus miR-6546-5p 14 27
cgr-miR-708 MIMAT0024001 Cricetulus griseus miR-708 14 27
cgr-miR-28-5p MIMAT0023878 Cricetulus griseus miR-28-5p 14 27
aca-miR-5406-3p MIMAT0022021 Anolis carolinensis miR-5406-3p 14 27
hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448 14 27
ppy-miR-708 MIMAT0016100 Pongo pygmaeus miR-708 14 27
tgu-miR-2962-5p MIMAT0014462 Taeniopygia guttata miR-2962-5p 14 27
ssc-miR-708-5p MIMAT0013945 Sus scrofa miR-708-5p 14 27
eca-miR-28-5p MIMAT0013092 Equus caballus miR-28-5p 14 27
eca-miR-708 MIMAT0012993 Equus caballus miR-708 14 27
mml-miR-708-5p MIMAT0012785 Macaca mulatta miR-708-5p 14 27
mdo-miR-28 MIMAT0012759 Monodelphis domestica miR-28 14 27
bta-miR-708 MIMAT0009367 Bos taurus miR-708 14 27
bta-miR-28 MIMAT0009272 Bos taurus miR-28 14 27
ptr-miR-708 MIMAT0008315 Pan troglodytes miR-708 14 27
cfa-miR-708 MIMAT0006643 Canis familiaris miR-708 14 27
oan-miR-1407 MIMAT0007217 Ornithorhynchus anatinus miR-1407 14 27
rno-miR-708-5p MIMAT0005331 Rattus norvegicus miR-708-5p 14 27
hsa-miR-708-5p MIMAT0004926 Homo sapiens miR-708-5p 14 27
mmu-miR-708-5p MIMAT0004828 Mus musculus miR-708-5p 14 27
ppa-miR-28 MIMAT0002359 Pan paniscus miR-28 14 27
lla-miR-28 MIMAT0002358 Lagothrix lagotricha miR-28 14 27
sla-miR-28 MIMAT0002357 Saguinus labiatus miR-28 14 27
mne-miR-28 MIMAT0002356 Macaca nemestrina miR-28 14 27
ppy-miR-28 MIMAT0002355 Pongo pygmaeus miR-28 14 27
ggo-miR-28 MIMAT0002354 Gorilla gorilla miR-28 14 27
ptr-miR-28 MIMAT0002353 Pan troglodytes miR-28 14 27
mml-miR-28-5p MIMAT0002352 Macaca mulatta miR-28-5p 14 27
age-miR-28 MIMAT0002351 Ateles geoffroyi miR-28 14 27
ssc-miR-28-5p MIMAT0002136 Sus scrofa miR-28-5p 14 27
rno-miR-28-5p MIMAT0000800 Rattus norvegicus miR-28-5p 14 27
mmu-miR-28a-5p MIMAT0000653 Mus musculus miR-28a-5p 14 27
hsa-miR-28-5p MIMAT0000085 Homo sapiens miR-28-5p 14 27
>ebv-miR-BART2-3p MIMAT0004744 Epstein Barr miR-BART2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaggagcg 8
||||||||
Sbjct: 1 aaggagcg 8
>tch-miR-708-5p MIMAT0036587 Tupaia chinensis miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>tch-miR-28-5p MIMAT0036565 Tupaia chinensis miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>chi-miR-708-5p MIMAT0036290 Capra hircus miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>chi-miR-28-5p MIMAT0036109 Capra hircus miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>efu-miR-28 MIMAT0034949 Eptesicus fuscus miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ssc-miR-7144-3p MIMAT0028164 Sus scrofa miR-7144-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggagc 7
|||||||
Sbjct: 7 aaggagc 1
>gga-miR-6648-5p MIMAT0025746 Gallus gallus miR-6648-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagcg 8
|||||||
Sbjct: 1 aggagcg 7
>gga-miR-6606-5p MIMAT0025700 Gallus gallus miR-6606-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagcg 8
|||||||
Sbjct: 2 aggagcg 8
>gga-miR-6546-5p MIMAT0025595 Gallus gallus miR-6546-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagcg 8
|||||||
Sbjct: 1 aggagcg 7
>cgr-miR-708 MIMAT0024001 Cricetulus griseus miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>cgr-miR-28-5p MIMAT0023878 Cricetulus griseus miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>aca-miR-5406-3p MIMAT0022021 Anolis carolinensis miR-5406-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagcg 8
|||||||
Sbjct: 2 aggagcg 8
>hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggagc 7
|||||||
Sbjct: 8 aaggagc 2
>ppy-miR-708 MIMAT0016100 Pongo pygmaeus miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>tgu-miR-2962-5p MIMAT0014462 Taeniopygia guttata miR-2962-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggagcg 8
|||||||
Sbjct: 1 aggagcg 7
>ssc-miR-708-5p MIMAT0013945 Sus scrofa miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>eca-miR-28-5p MIMAT0013092 Equus caballus miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>eca-miR-708 MIMAT0012993 Equus caballus miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mml-miR-708-5p MIMAT0012785 Macaca mulatta miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mdo-miR-28 MIMAT0012759 Monodelphis domestica miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>bta-miR-708 MIMAT0009367 Bos taurus miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>bta-miR-28 MIMAT0009272 Bos taurus miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ptr-miR-708 MIMAT0008315 Pan troglodytes miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>cfa-miR-708 MIMAT0006643 Canis familiaris miR-708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>oan-miR-1407 MIMAT0007217 Ornithorhynchus anatinus miR-1407
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>rno-miR-708-5p MIMAT0005331 Rattus norvegicus miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>hsa-miR-708-5p MIMAT0004926 Homo sapiens miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mmu-miR-708-5p MIMAT0004828 Mus musculus miR-708-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ppa-miR-28 MIMAT0002359 Pan paniscus miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>lla-miR-28 MIMAT0002358 Lagothrix lagotricha miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>sla-miR-28 MIMAT0002357 Saguinus labiatus miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mne-miR-28 MIMAT0002356 Macaca nemestrina miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ppy-miR-28 MIMAT0002355 Pongo pygmaeus miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ggo-miR-28 MIMAT0002354 Gorilla gorilla miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ptr-miR-28 MIMAT0002353 Pan troglodytes miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mml-miR-28-5p MIMAT0002352 Macaca mulatta miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>age-miR-28 MIMAT0002351 Ateles geoffroyi miR-28
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>ssc-miR-28-5p MIMAT0002136 Sus scrofa miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>rno-miR-28-5p MIMAT0000800 Rattus norvegicus miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>mmu-miR-28a-5p MIMAT0000653 Mus musculus miR-28a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
>hsa-miR-28-5p MIMAT0000085 Homo sapiens miR-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggagc 7
|||||||
Sbjct: 1 aaggagc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 173
Number of extensions: 130
Number of successful extensions: 98
Number of sequences better than 100.0: 42
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 42
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
