BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8654c MIMAT0034019 Gossypium raimondii miR8654c 16 6.9
gra-miR8654b MIMAT0034018 Gossypium raimondii miR8654b 16 6.9
gra-miR8654a MIMAT0034017 Gossypium raimondii miR8654a 16 6.9
sma-miR-8478-3p MIMAT0033678 Schistosoma mansoni miR-8478-3p 14 27
tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p 14 27
aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247 14 27
bmo-miR-3377-3p MIMAT0015568 Bombyx mori miR-3377-3p 14 27
dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p 14 27
dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura miR-iab-8-3p 14 27
>gra-miR8654c MIMAT0034019 Gossypium raimondii miR8654c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaggatac 8
||||||||
Sbjct: 1 aaggatac 8
>gra-miR8654b MIMAT0034018 Gossypium raimondii miR8654b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaggatac 8
||||||||
Sbjct: 1 aaggatac 8
>gra-miR8654a MIMAT0034017 Gossypium raimondii miR8654a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aaggatac 8
||||||||
Sbjct: 1 aaggatac 8
>sma-miR-8478-3p MIMAT0033678 Schistosoma mansoni miR-8478-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggata 7
|||||||
Sbjct: 1 aaggata 7
>tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatac 8
|||||||
Sbjct: 1 aggatac 7
>aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggatac 8
|||||||
Sbjct: 8 aggatac 2
>bmo-miR-3377-3p MIMAT0015568 Bombyx mori miR-3377-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggata 7
|||||||
Sbjct: 7 aaggata 1
>dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatac 8
|||||||
Sbjct: 1 aggatac 7
>dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura
miR-iab-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatac 8
|||||||
Sbjct: 1 aggatac 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 134
Number of extensions: 122
Number of successful extensions: 78
Number of sequences better than 100.0: 9
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
