BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-7
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p 14 20
ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p 14 20
eca-miR-9123 MIMAT0034673 Equus caballus miR-9123 14 20
asu-miR-5352-5p MIMAT0021562 Ascaris suum miR-5352-5p 14 20
ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p 14 20
ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p 14 20
ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525 14 20
ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524 14 20
hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p 14 20
hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p 14 20
ata-miR168-3p MIMAT0037153 Aegilops tauschii miR168-3p 12 80
bra-miR168a-3p MIMAT0035837 Brassica rapa miR168a-3p 12 80
bra-miR168c-3p MIMAT0035835 Brassica rapa miR168c-3p 12 80
bra-miR168b-3p MIMAT0035833 Brassica rapa miR168b-3p 12 80
dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster miR-9383-3p 12 80
eca-miR-8987 MIMAT0034524 Equus caballus miR-8987 12 80
ppc-miR-8220-5p MIMAT0032874 Pristionchus pacificus miR-8220-5p 12 80
cel-miR-8194-5p MIMAT0032801 Caenorhabditis elegans miR-8194-5p 12 80
mmu-miR-8099 MIMAT0031401 Mus musculus miR-8099 12 80
bdi-miR7718-3p MIMAT0030159 Brachypodium distachyon miR7718-3p 12 80
mmu-miR-6546-5p MIMAT0029792 Mus musculus miR-6546-5p 12 80
sly-miR168b-3p MIMAT0031132 Solanum lycopersicum miR168b-3p 12 80
dev-miR-D2-3p MIMAT0028171 Duck enteritis miR-D2-3p 12 80
mmu-miR-6977-3p MIMAT0027857 Mus musculus miR-6977-3p 12 80
hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p 12 80
mtr-miR168c-3p MIMAT0022236 Medicago truncatula miR168c-3p 12 80
osa-miR5488 MIMAT0022121 Oryza sativa miR5488 12 80
asu-miR-124-5p MIMAT0021495 Ascaris suum miR-124-5p 12 80
bdi-miR168-3p MIMAT0027053 Brachypodium distachyon miR168-3p 12 80
hsa-miR-4484 MIMAT0019018 Homo sapiens miR-4484 12 80
tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p 12 80
tca-miR-3885-5p MIMAT0018868 Tribolium castaneum miR-3885-5p 12 80
ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566 12 80
aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p 12 80
aly-miR168a-3p MIMAT0017482 Arabidopsis lyrata miR168a-3p 12 80
hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197 12 80
dvi-miR-87-5p MIMAT0032094 Drosophila virilis miR-87-5p 12 80
ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566 12 80
cre-miR1154-3p MIMAT0005403 Chlamydomonas reinhardtii miR1154-3p 12 80
hsa-miR-668-5p MIMAT0026636 Homo sapiens miR-668-5p 12 80
hsa-miR-566 MIMAT0003230 Homo sapiens miR-566 12 80
kshv-miR-K12-8-3p MIMAT0002186 Kaposi sarcoma-associated miR-K12... 12 80
ptc-miR168b-3p MIMAT0022897 Populus trichocarpa miR168b-3p 12 80
ptc-miR168a-3p MIMAT0022896 Populus trichocarpa miR168a-3p 12 80
zma-miR168b-3p MIMAT0015192 Zea mays miR168b-3p 12 80
zma-miR168a-3p MIMAT0015191 Zea mays miR168a-3p 12 80
dme-miR-87-5p MIMAT0020821 Drosophila melanogaster miR-87-5p 12 80
ath-miR168a-3p MIMAT0031884 Arabidopsis thaliana miR168a-3p 12 80
>ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>eca-miR-9123 MIMAT0034673 Equus caballus miR-9123
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggcgc 7
|||||||
Sbjct: 8 aaggcgc 2
>asu-miR-5352-5p MIMAT0021562 Ascaris suum miR-5352-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 1 aaggcgc 7
>ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggcgc 7
|||||||
Sbjct: 2 aaggcgc 8
>ata-miR168-3p MIMAT0037153 Aegilops tauschii miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>bra-miR168a-3p MIMAT0035837 Brassica rapa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>bra-miR168c-3p MIMAT0035835 Brassica rapa miR168c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>bra-miR168b-3p MIMAT0035833 Brassica rapa miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>dme-miR-9383-3p MIMAT0035230 Drosophila melanogaster
miR-9383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>eca-miR-8987 MIMAT0034524 Equus caballus miR-8987
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 3 aaggcg 8
>ppc-miR-8220-5p MIMAT0032874 Pristionchus pacificus miR-8220-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
>cel-miR-8194-5p MIMAT0032801 Caenorhabditis elegans miR-8194-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>mmu-miR-8099 MIMAT0031401 Mus musculus miR-8099
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 3 aaggcg 8
>bdi-miR7718-3p MIMAT0030159 Brachypodium distachyon miR7718-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>mmu-miR-6546-5p MIMAT0029792 Mus musculus miR-6546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>sly-miR168b-3p MIMAT0031132 Solanum lycopersicum miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>dev-miR-D2-3p MIMAT0028171 Duck enteritis miR-D2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 3 aaggcg 8
>mmu-miR-6977-3p MIMAT0027857 Mus musculus miR-6977-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 1 aaggcg 6
>hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 1 aggcgc 6
>mtr-miR168c-3p MIMAT0022236 Medicago truncatula miR168c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>osa-miR5488 MIMAT0022121 Oryza sativa miR5488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 3 aaggcg 8
>asu-miR-124-5p MIMAT0021495 Ascaris suum miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 6 aaggcg 1
>bdi-miR168-3p MIMAT0027053 Brachypodium distachyon miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>hsa-miR-4484 MIMAT0019018 Homo sapiens miR-4484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 3 aaggcg 8
>tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>tca-miR-3885-5p MIMAT0018868 Tribolium castaneum miR-3885-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggcg 6
||||||
Sbjct: 1 aaggcg 6
>ppy-miR-566 MIMAT0016010 Pongo pygmaeus miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>aly-miR399b-5p MIMAT0017573 Arabidopsis lyrata miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>aly-miR168a-3p MIMAT0017482 Arabidopsis lyrata miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>dvi-miR-87-5p MIMAT0032094 Drosophila virilis miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ptr-miR-566 MIMAT0008244 Pan troglodytes miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>cre-miR1154-3p MIMAT0005403 Chlamydomonas reinhardtii
miR1154-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 6 aaggcg 1
>hsa-miR-668-5p MIMAT0026636 Homo sapiens miR-668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 7 aggcgc 2
>hsa-miR-566 MIMAT0003230 Homo sapiens miR-566
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>kshv-miR-K12-8-3p MIMAT0002186 Kaposi sarcoma-associated
miR-K12-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggcgc 7
||||||
Sbjct: 3 aggcgc 8
>ptc-miR168b-3p MIMAT0022897 Populus trichocarpa miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>ptc-miR168a-3p MIMAT0022896 Populus trichocarpa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>zma-miR168b-3p MIMAT0015192 Zea mays miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>zma-miR168a-3p MIMAT0015191 Zea mays miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
>dme-miR-87-5p MIMAT0020821 Drosophila melanogaster miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggcgc 7
||||||
Sbjct: 8 aggcgc 3
>ath-miR168a-3p MIMAT0031884 Arabidopsis thaliana miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggcg 6
||||||
Sbjct: 8 aaggcg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 63
Number of extensions: 53
Number of successful extensions: 49
Number of sequences better than 100.0: 48
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 49
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
