BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR5200-5p MIMAT0037138 Aegilops tauschii miR5200-5p 14 27
hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p 14 27
mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p 14 27
aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228 14 27
cin-miR-4052-5p MIMAT0016593 Ciona intestinalis miR-4052-5p 14 27
sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p 14 27
sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p 14 27
cel-miR-798 MIMAT0004233 Caenorhabditis elegans miR-798 14 27
sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p 14 27
osa-miR168b MIMAT0001046 Oryza sativa miR168b 14 27
>ata-miR5200-5p MIMAT0037138 Aegilops tauschii miR5200-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggctt 7
|||||||
Sbjct: 7 aaggctt 1
>hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggcttg 8
|||||||
Sbjct: 7 aggcttg 1
>mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggcttg 8
|||||||
Sbjct: 8 aggcttg 2
>aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggctt 7
|||||||
Sbjct: 8 aaggctt 2
>cin-miR-4052-5p MIMAT0016593 Ciona intestinalis miR-4052-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggcttg 8
|||||||
Sbjct: 2 aggcttg 8
>sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggcttg 8
|||||||
Sbjct: 1 aggcttg 7
>sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggcttg 8
|||||||
Sbjct: 1 aggcttg 7
>cel-miR-798 MIMAT0004233 Caenorhabditis elegans miR-798
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggctt 7
|||||||
Sbjct: 8 aaggctt 2
>sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggctt 7
|||||||
Sbjct: 1 aaggctt 7
>osa-miR168b MIMAT0001046 Oryza sativa miR168b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggcttg 8
|||||||
Sbjct: 1 aggcttg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 103
Number of extensions: 93
Number of successful extensions: 77
Number of sequences better than 100.0: 10
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
