BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-14
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bbe-miR-4869-3p MIMAT0031738 Branchiostoma belcheri miR-4869-3p        14      27
hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p                  14      27
mmu-miR-7042-3p MIMAT0027989 Mus musculus miR-7042-3p                  14      27
ptc-miR6462c-5p MIMAT0025205 Populus trichocarpa miR6462c-5p           14      27
cgr-miR-3072-5p MIMAT0023892 Cricetulus griseus miR-3072-5p            14      27
mtr-miR5284g MIMAT0021341 Medicago truncatula miR5284g                 14      27
mtr-miR5284f MIMAT0021340 Medicago truncatula miR5284f                 14      27
mtr-miR5284e MIMAT0021339 Medicago truncatula miR5284e                 14      27
mtr-miR5284d MIMAT0021338 Medicago truncatula miR5284d                 14      27
mtr-miR5284c MIMAT0021337 Medicago truncatula miR5284c                 14      27
mtr-miR5284a MIMAT0021335 Medicago truncatula miR5284a                 14      27
hsa-miR-4475 MIMAT0019002 Homo sapiens miR-4475                        14      27
hsa-miR-3649 MIMAT0018069 Homo sapiens miR-3649                        14      27
ppy-miR-623 MIMAT0016064 Pongo pygmaeus miR-623                        14      27
mmu-miR-3072-5p MIMAT0014852 Mus musculus miR-3072-5p                  14      27
bmo-miR-2777-5p MIMAT0013662 Bombyx mori miR-2777-5p                   14      27
tca-miR-12-3p MIMAT0019102 Tribolium castaneum miR-12-3p               14      27
oan-miR-1413-5p MIMAT0026761 Ornithorhynchus anatinus miR-1413-5p      14      27
smo-miR1114 MIMAT0005272 Selaginella moellendorffii miR1114            14      27
cre-miR905-5p MIMAT0004964 Chlamydomonas reinhardtii miR905-5p         14      27
>bbe-miR-4869-3p MIMAT0031738 Branchiostoma belcheri miR-4869-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 1 agggacc 7
>hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 1 aagggac 7
>mmu-miR-7042-3p MIMAT0027989 Mus musculus miR-7042-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 8 aagggac 2
>ptc-miR6462c-5p MIMAT0025205 Populus trichocarpa miR6462c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 1 aagggac 7
>cgr-miR-3072-5p MIMAT0023892 Cricetulus griseus miR-3072-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 1 agggacc 7
>mtr-miR5284g MIMAT0021341 Medicago truncatula miR5284g
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>mtr-miR5284f MIMAT0021340 Medicago truncatula miR5284f
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>mtr-miR5284e MIMAT0021339 Medicago truncatula miR5284e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>mtr-miR5284d MIMAT0021338 Medicago truncatula miR5284d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>mtr-miR5284c MIMAT0021337 Medicago truncatula miR5284c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>mtr-miR5284a MIMAT0021335 Medicago truncatula miR5284a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>hsa-miR-4475 MIMAT0019002 Homo sapiens miR-4475
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 2 aagggac 8
>hsa-miR-3649 MIMAT0018069 Homo sapiens miR-3649
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 1 agggacc 7
>ppy-miR-623 MIMAT0016064 Pongo pygmaeus miR-623
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 7 aagggac 1
>mmu-miR-3072-5p MIMAT0014852 Mus musculus miR-3072-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 1 agggacc 7
>bmo-miR-2777-5p MIMAT0013662 Bombyx mori miR-2777-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 1 agggacc 7
>tca-miR-12-3p MIMAT0019102 Tribolium castaneum miR-12-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 8 agggacc 2
>oan-miR-1413-5p MIMAT0026761 Ornithorhynchus anatinus
         miR-1413-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 2 agggacc 8
>smo-miR1114 MIMAT0005272 Selaginella moellendorffii miR1114
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagggac 7
         |||||||
Sbjct: 1 aagggac 7
>cre-miR905-5p MIMAT0004964 Chlamydomonas reinhardtii miR905-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agggacc 8
         |||||||
Sbjct: 8 agggacc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 308
Number of extensions: 288
Number of successful extensions: 209
Number of sequences better than 100.0: 20
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)