BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p 14 20
hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p 14 20
hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a 14 20
mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259 14 20
hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936 14 20
hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p 14 20
hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p 14 20
oha-miR-204-2-3p MIMAT0036814 Ophiophagus hannah miR-204-2-3p 12 80
chi-miR-342-5p MIMAT0036157 Capra hircus miR-342-5p 12 80
dvi-miR-988-3p MIMAT0035601 Drosophila virilis miR-988-3p 12 80
ssa-miR-130b-2-5p MIMAT0032326 Salmo salar miR-130b-2-5p 12 80
stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004 12 80
rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p 12 80
tgu-miR-7645-5p MIMAT0029790 Taeniopygia guttata miR-7645-5p 12 80
mdo-miR-7378-3p MIMAT0028813 Monodelphis domestica miR-7378-3p 12 80
mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p 12 80
mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p 12 80
mmu-miR-6953-5p MIMAT0027806 Mus musculus miR-6953-5p 12 80
mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p 12 80
mmu-miR-6930-5p MIMAT0027760 Mus musculus miR-6930-5p 12 80
hsa-miR-6846-3p MIMAT0027593 Homo sapiens miR-6846-3p 12 80
hsa-miR-6801-3p MIMAT0027503 Homo sapiens miR-6801-3p 12 80
hsa-miR-6795-3p MIMAT0027491 Homo sapiens miR-6795-3p 12 80
hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p 12 80
hsa-miR-6743-5p MIMAT0027387 Homo sapiens miR-6743-5p 12 80
hsa-miR-6738-5p MIMAT0027377 Homo sapiens miR-6738-5p 12 80
gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p 12 80
mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716 12 80
cgr-miR-342-5p MIMAT0023922 Cricetulus griseus miR-342-5p 12 80
hsa-miR-6085 MIMAT0023710 Homo sapiens miR-6085 12 80
hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p 12 80
hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d 12 80
mtr-miR5759 MIMAT0023146 Medicago truncatula miR5759 12 80
hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194 12 80
osa-miR5148c MIMAT0021096 Oryza sativa miR5148c 12 80
osa-miR5148b MIMAT0021095 Oryza sativa miR5148b 12 80
osa-miR5148a MIMAT0021094 Oryza sativa miR5148a 12 80
hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p 12 80
pma-miR-4601 MIMAT0019635 Petromyzon marinus miR-4601 12 80
oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p 12 80
tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p 12 80
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 12 80
rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b 12 80
ppy-miR-608 MIMAT0016049 Pongo pygmaeus miR-608 12 80
ppy-miR-342-5p MIMAT0015844 Pongo pygmaeus miR-342-5p 12 80
hsa-miR-3179 MIMAT0015056 Homo sapiens miR-3179 12 80
hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22 12 80
aae-miR-988-3p MIMAT0014281 Aedes aegypti miR-988-3p 12 80
osa-miR2919 MIMAT0014050 Oryza sativa miR2919 12 80
eca-miR-342-5p MIMAT0013136 Equus caballus miR-342-5p 12 80
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 12 80
dsi-miR-988-3p MIMAT0012436 Drosophila simulans miR-988-3p 12 80
dps-miR-988-3p MIMAT0012234 Drosophila pseudoobscura miR-988-3p 12 80
bta-miR-2343 MIMAT0011878 Bos taurus miR-2343 12 80
bta-miR-2326 MIMAT0011855 Bos taurus miR-2326 12 80
aga-miR-988 MIMAT0010104 Anopheles gambiae miR-988 12 80
hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p 12 80
cel-miR-1829a-5p MIMAT0015267 Caenorhabditis elegans miR-1829a-5p 12 80
cel-miR-1823-5p MIMAT0032035 Caenorhabditis elegans miR-1823-5p 12 80
mml-miR-342-5p MIMAT0006282 Macaca mulatta miR-342-5p 12 80
oan-miR-1398-5p MIMAT0007201 Ornithorhynchus anatinus miR-1398-5p 12 80
ppt-miR1055 MIMAT0005173 Physcomitrella patens miR1055 12 80
dme-miR-988-3p MIMAT0005505 Drosophila melanogaster miR-988-3p 12 80
osa-miR815c MIMAT0004060 Oryza sativa miR815c 12 80
osa-miR815b MIMAT0004059 Oryza sativa miR815b 12 80
osa-miR815a MIMAT0004058 Oryza sativa miR815a 12 80
hsa-miR-608 MIMAT0003276 Homo sapiens miR-608 12 80
ath-miR447c-5p MIMAT0020346 Arabidopsis thaliana miR447c-5p 12 80
hsa-miR-342-5p MIMAT0004694 Homo sapiens miR-342-5p 12 80
mmu-miR-342-5p MIMAT0004653 Mus musculus miR-342-5p 12 80
rno-miR-342-5p MIMAT0004652 Rattus norvegicus miR-342-5p 12 80
>mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggggt 7
|||||||
Sbjct: 1 aaggggt 7
>hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggggt 7
|||||||
Sbjct: 8 aaggggt 2
>hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggggt 7
|||||||
Sbjct: 8 aaggggt 2
>mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggggt 7
|||||||
Sbjct: 2 aaggggt 8
>hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggggt 7
|||||||
Sbjct: 2 aaggggt 8
>hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggggt 7
|||||||
Sbjct: 2 aaggggt 8
>hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggggt 7
|||||||
Sbjct: 2 aaggggt 8
>oha-miR-204-2-3p MIMAT0036814 Ophiophagus hannah miR-204-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>chi-miR-342-5p MIMAT0036157 Capra hircus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>dvi-miR-988-3p MIMAT0035601 Drosophila virilis miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>ssa-miR-130b-2-5p MIMAT0032326 Salmo salar miR-130b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 8 aagggg 3
>stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>tgu-miR-7645-5p MIMAT0029790 Taeniopygia guttata miR-7645-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 8 aagggg 3
>mdo-miR-7378-3p MIMAT0028813 Monodelphis domestica miR-7378-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>mmu-miR-6953-5p MIMAT0027806 Mus musculus miR-6953-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>mmu-miR-6949-3p MIMAT0027799 Mus musculus miR-6949-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 8 aagggg 3
>mmu-miR-6930-5p MIMAT0027760 Mus musculus miR-6930-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>hsa-miR-6846-3p MIMAT0027593 Homo sapiens miR-6846-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 8 aggggt 3
>hsa-miR-6801-3p MIMAT0027503 Homo sapiens miR-6801-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 6 aggggt 1
>hsa-miR-6795-3p MIMAT0027491 Homo sapiens miR-6795-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 6 aggggt 1
>hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>hsa-miR-6743-5p MIMAT0027387 Homo sapiens miR-6743-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>hsa-miR-6738-5p MIMAT0027377 Homo sapiens miR-6738-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 6 aggggt 1
>mml-miR-4716 MIMAT0024337 Macaca mulatta miR-4716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>cgr-miR-342-5p MIMAT0023922 Cricetulus griseus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>hsa-miR-6085 MIMAT0023710 Homo sapiens miR-6085
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 8 aggggt 3
>hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 8 aggggt 3
>mtr-miR5759 MIMAT0023146 Medicago truncatula miR5759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>osa-miR5148c MIMAT0021096 Oryza sativa miR5148c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>osa-miR5148b MIMAT0021095 Oryza sativa miR5148b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>osa-miR5148a MIMAT0021094 Oryza sativa miR5148a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>pma-miR-4601 MIMAT0019635 Petromyzon marinus miR-4601
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 8 aagggg 3
>oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 3 aagggg 8
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>ppy-miR-608 MIMAT0016049 Pongo pygmaeus miR-608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>ppy-miR-342-5p MIMAT0015844 Pongo pygmaeus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>hsa-miR-3179 MIMAT0015056 Homo sapiens miR-3179
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 3 aagggg 8
>hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>aae-miR-988-3p MIMAT0014281 Aedes aegypti miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>osa-miR2919 MIMAT0014050 Oryza sativa miR2919
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>eca-miR-342-5p MIMAT0013136 Equus caballus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>dsi-miR-988-3p MIMAT0012436 Drosophila simulans miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>dps-miR-988-3p MIMAT0012234 Drosophila pseudoobscura miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>bta-miR-2343 MIMAT0011878 Bos taurus miR-2343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>bta-miR-2326 MIMAT0011855 Bos taurus miR-2326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 8 aagggg 3
>aga-miR-988 MIMAT0010104 Anopheles gambiae miR-988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>cel-miR-1829a-5p MIMAT0015267 Caenorhabditis elegans
miR-1829a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>cel-miR-1823-5p MIMAT0032035 Caenorhabditis elegans miR-1823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggggt 7
||||||
Sbjct: 6 aggggt 1
>mml-miR-342-5p MIMAT0006282 Macaca mulatta miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>oan-miR-1398-5p MIMAT0007201 Ornithorhynchus anatinus
miR-1398-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>ppt-miR1055 MIMAT0005173 Physcomitrella patens miR1055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 3 aggggt 8
>dme-miR-988-3p MIMAT0005505 Drosophila melanogaster miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>osa-miR815c MIMAT0004060 Oryza sativa miR815c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>osa-miR815b MIMAT0004059 Oryza sativa miR815b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>osa-miR815a MIMAT0004058 Oryza sativa miR815a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aagggg 6
||||||
Sbjct: 1 aagggg 6
>hsa-miR-608 MIMAT0003276 Homo sapiens miR-608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>ath-miR447c-5p MIMAT0020346 Arabidopsis thaliana miR447c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aagggg 6
||||||
Sbjct: 6 aagggg 1
>hsa-miR-342-5p MIMAT0004694 Homo sapiens miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>mmu-miR-342-5p MIMAT0004653 Mus musculus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
>rno-miR-342-5p MIMAT0004652 Rattus norvegicus miR-342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggggt 7
||||||
Sbjct: 1 aggggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 93
Number of extensions: 86
Number of successful extensions: 71
Number of sequences better than 100.0: 71
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 71
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)