BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8675a MIMAT0034046 Gossypium raimondii miR8675a 14 20
mmu-miR-7019-3p MIMAT0027943 Mus musculus miR-7019-3p 14 20
pma-miR-4602 MIMAT0019636 Petromyzon marinus miR-4602 14 20
bmo-miR-3231 MIMAT0015413 Bombyx mori miR-3231 14 20
odi-miR-1471 MIMAT0006022 Oikopleura dioica miR-1471 14 20
oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393 14 20
rlcv-miR-rL1-8-5p MIMAT0003437 Rhesus lymphocryptovirus miR-rL1-... 14 20
ebv-miR-BART5-5p MIMAT0003413 Epstein Barr miR-BART5-5p 14 20
ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p 12 80
oha-miR-125a-3p MIMAT0036673 Ophiophagus hannah miR-125a-3p 12 80
chi-miR-125a-3p MIMAT0035924 Capra hircus miR-125a-3p 12 80
dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p 12 80
dvi-miR-1010-3p MIMAT0035557 Drosophila virilis miR-1010-3p 12 80
efu-miR-9222 MIMAT0034815 Eptesicus fuscus miR-9222 12 80
eca-miR-3200 MIMAT0034551 Equus caballus miR-3200 12 80
gra-miR8675c MIMAT0034085 Gossypium raimondii miR8675c 12 80
gra-miR8675b MIMAT0034084 Gossypium raimondii miR8675b 12 80
sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p 12 80
str-miR-8394-5p MIMAT0033462 Strongyloides ratti miR-8394-5p 12 80
ssa-miR-125b-3-3p MIMAT0032310 Salmo salar miR-125b-3-3p 12 80
ssa-miR-125b-1-3p MIMAT0032308 Salmo salar miR-125b-1-3p 12 80
bbe-miR-4856a-3p MIMAT0031734 Branchiostoma belcheri miR-4856a-3p 12 80
prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus miR-7950b-5p 12 80
prd-miR-7878-5p MIMAT0030512 Panagrellus redivivus miR-7878-5p 12 80
hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p 12 80
pmi-miR-2011-3p MIMAT0032186 Patiria miniata miR-2011-3p 12 80
mmu-miR-7658-3p MIMAT0029823 Mus musculus miR-7658-3p 12 80
cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624 12 80
mdo-miR-7381-5p MIMAT0028818 Monodelphis domestica miR-7381-5p 12 80
mdo-miR-7278-3p MIMAT0028531 Monodelphis domestica miR-7278-3p 12 80
mdo-miR-7244-3p MIMAT0028455 Monodelphis domestica miR-7244-3p 12 80
mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p 12 80
mmu-miR-7037-5p MIMAT0027978 Mus musculus miR-7037-5p 12 80
hsa-miR-6800-5p MIMAT0027500 Homo sapiens miR-6800-5p 12 80
hsa-miR-6782-3p MIMAT0027465 Homo sapiens miR-6782-3p 12 80
hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p 12 80
hvu-miR6189 MIMAT0024814 Hordeum vulgare miR6189 12 80
mml-miR-3200-3p MIMAT0024323 Macaca mulatta miR-3200-3p 12 80
ptr-miR-3200 MIMAT0024036 Pan troglodytes miR-3200 12 80
cgr-miR-125a-3p MIMAT0023742 Cricetulus griseus miR-125a-3p 12 80
ola-miR-125a-3p MIMAT0022639 Oryzias latipes miR-125a-3p 12 80
ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662 12 80
aca-miR-125a-3p MIMAT0021728 Anolis carolinensis miR-125a-3p 12 80
hsa-miR-4761-5p MIMAT0019908 Homo sapiens miR-4761-5p 12 80
oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p 12 80
gma-miR4387b MIMAT0018272 Glycine max miR4387b 12 80
hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p 12 80
hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p 12 80
cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p 12 80
ahy-miR3520-5p MIMAT0016346 Arachis hypogaea miR3520-5p 12 80
ppy-miR-125a-3p MIMAT0015749 Pongo pygmaeus miR-125a-3p 12 80
aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p 12 80
hsa-miR-3200-3p MIMAT0015085 Homo sapiens miR-3200-3p 12 80
eca-miR-412 MIMAT0013155 Equus caballus miR-412 12 80
eca-miR-125a-3p MIMAT0013009 Equus caballus miR-125a-3p 12 80
dsi-miR-1010-3p MIMAT0012464 Drosophila simulans miR-1010-3p 12 80
dps-miR-1010-3p MIMAT0012274 Drosophila pseudoobscura miR-1010-3p 12 80
ptr-miR-125a MIMAT0007984 Pan troglodytes miR-125a 12 80
mml-miR-125a-3p MIMAT0006182 Macaca mulatta miR-125a-3p 12 80
gga-miR-1736-3p MIMAT0007639 Gallus gallus miR-1736-3p 12 80
gga-miR-1554 MIMAT0007411 Gallus gallus miR-1554 12 80
odi-miR-1499 MIMAT0006059 Oikopleura dioica miR-1499 12 80
odi-miR-1470 MIMAT0006021 Oikopleura dioica miR-1470 12 80
cre-miR1142 MIMAT0005376 Chlamydomonas reinhardtii miR1142 12 80
ppt-miR1032 MIMAT0005135 Physcomitrella patens miR1032 12 80
dme-miR-1016-3p MIMAT0005029 Drosophila melanogaster miR-1016-3p 12 80
dme-miR-1010-3p MIMAT0005023 Drosophila melanogaster miR-1010-3p 12 80
cre-miR905-3p MIMAT0004386 Chlamydomonas reinhardtii miR905-3p 12 80
rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p 12 80
mmu-miR-412-3p MIMAT0001094 Mus musculus miR-412-3p 12 80
rno-miR-125a-3p MIMAT0004729 Rattus norvegicus miR-125a-3p 12 80
hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p 12 80
mmu-miR-125a-3p MIMAT0004528 Mus musculus miR-125a-3p 12 80
>gra-miR8675a MIMAT0034046 Gossypium raimondii miR8675a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggtga 7
|||||||
Sbjct: 1 aaggtga 7
>mmu-miR-7019-3p MIMAT0027943 Mus musculus miR-7019-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggtga 7
|||||||
Sbjct: 7 aaggtga 1
>pma-miR-4602 MIMAT0019636 Petromyzon marinus miR-4602
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggtga 7
|||||||
Sbjct: 7 aaggtga 1
>bmo-miR-3231 MIMAT0015413 Bombyx mori miR-3231
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggtga 7
|||||||
Sbjct: 7 aaggtga 1
>odi-miR-1471 MIMAT0006022 Oikopleura dioica miR-1471
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggtga 7
|||||||
Sbjct: 7 aaggtga 1
>oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aaggtga 7
|||||||
Sbjct: 7 aaggtga 1
>rlcv-miR-rL1-8-5p MIMAT0003437 Rhesus lymphocryptovirus
miR-rL1-8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggtga 7
|||||||
Sbjct: 2 aaggtga 8
>ebv-miR-BART5-5p MIMAT0003413 Epstein Barr miR-BART5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aaggtga 7
|||||||
Sbjct: 2 aaggtga 8
>ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>oha-miR-125a-3p MIMAT0036673 Ophiophagus hannah miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>chi-miR-125a-3p MIMAT0035924 Capra hircus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>dvi-miR-1010-3p MIMAT0035557 Drosophila virilis miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>efu-miR-9222 MIMAT0034815 Eptesicus fuscus miR-9222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>eca-miR-3200 MIMAT0034551 Equus caballus miR-3200
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>gra-miR8675c MIMAT0034085 Gossypium raimondii miR8675c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>gra-miR8675b MIMAT0034084 Gossypium raimondii miR8675b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 3 aaggtg 8
>str-miR-8394-5p MIMAT0033462 Strongyloides ratti miR-8394-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>ssa-miR-125b-3-3p MIMAT0032310 Salmo salar miR-125b-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>ssa-miR-125b-1-3p MIMAT0032308 Salmo salar miR-125b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>bbe-miR-4856a-3p MIMAT0031734 Branchiostoma belcheri
miR-4856a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus
miR-7950b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>prd-miR-7878-5p MIMAT0030512 Panagrellus redivivus miR-7878-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 3 aaggtg 8
>hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>pmi-miR-2011-3p MIMAT0032186 Patiria miniata miR-2011-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 3 aaggtg 8
>mmu-miR-7658-3p MIMAT0029823 Mus musculus miR-7658-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 8 aaggtg 3
>cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>mdo-miR-7381-5p MIMAT0028818 Monodelphis domestica miR-7381-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>mdo-miR-7278-3p MIMAT0028531 Monodelphis domestica miR-7278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>mdo-miR-7244-3p MIMAT0028455 Monodelphis domestica miR-7244-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 6 aggtga 1
>mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>mmu-miR-7037-5p MIMAT0027978 Mus musculus miR-7037-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>hsa-miR-6800-5p MIMAT0027500 Homo sapiens miR-6800-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>hsa-miR-6782-3p MIMAT0027465 Homo sapiens miR-6782-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 6 aggtga 1
>hvu-miR6189 MIMAT0024814 Hordeum vulgare miR6189
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>mml-miR-3200-3p MIMAT0024323 Macaca mulatta miR-3200-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>ptr-miR-3200 MIMAT0024036 Pan troglodytes miR-3200
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>cgr-miR-125a-3p MIMAT0023742 Cricetulus griseus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>ola-miR-125a-3p MIMAT0022639 Oryzias latipes miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>aca-miR-125a-3p MIMAT0021728 Anolis carolinensis miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>hsa-miR-4761-5p MIMAT0019908 Homo sapiens miR-4761-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 3 aaggtg 8
>oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>gma-miR4387b MIMAT0018272 Glycine max miR4387b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 6 aggtga 1
>hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 6 aggtga 1
>cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 8 aaggtg 3
>ahy-miR3520-5p MIMAT0016346 Arachis hypogaea miR3520-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>ppy-miR-125a-3p MIMAT0015749 Pongo pygmaeus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>hsa-miR-3200-3p MIMAT0015085 Homo sapiens miR-3200-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 6 aaggtg 1
>eca-miR-412 MIMAT0013155 Equus caballus miR-412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 7 aggtga 2
>eca-miR-125a-3p MIMAT0013009 Equus caballus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>dsi-miR-1010-3p MIMAT0012464 Drosophila simulans miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>dps-miR-1010-3p MIMAT0012274 Drosophila pseudoobscura
miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>ptr-miR-125a MIMAT0007984 Pan troglodytes miR-125a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>mml-miR-125a-3p MIMAT0006182 Macaca mulatta miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>gga-miR-1736-3p MIMAT0007639 Gallus gallus miR-1736-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 8 aaggtg 3
>gga-miR-1554 MIMAT0007411 Gallus gallus miR-1554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>odi-miR-1499 MIMAT0006059 Oikopleura dioica miR-1499
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 8 aaggtg 3
>odi-miR-1470 MIMAT0006021 Oikopleura dioica miR-1470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aaggtg 6
||||||
Sbjct: 8 aaggtg 3
>cre-miR1142 MIMAT0005376 Chlamydomonas reinhardtii miR1142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>ppt-miR1032 MIMAT0005135 Physcomitrella patens miR1032
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 1 aggtga 6
>dme-miR-1016-3p MIMAT0005029 Drosophila melanogaster
miR-1016-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 7 aggtga 2
>dme-miR-1010-3p MIMAT0005023 Drosophila melanogaster
miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>cre-miR905-3p MIMAT0004386 Chlamydomonas reinhardtii miR905-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aaggtg 6
||||||
Sbjct: 1 aaggtg 6
>rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 8 aggtga 3
>mmu-miR-412-3p MIMAT0001094 Mus musculus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggtga 7
||||||
Sbjct: 7 aggtga 2
>rno-miR-125a-3p MIMAT0004729 Rattus norvegicus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
>mmu-miR-125a-3p MIMAT0004528 Mus musculus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggtga 7
||||||
Sbjct: 3 aggtga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 151
Number of successful extensions: 73
Number of sequences better than 100.0: 73
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 73
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
