BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul112-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hcmv-miR-UL112-3p MIMAT0001577 Human cytomegalovirus miR-UL112-3p 16 6.9
bra-miR161-3p MIMAT0035879 Brassica rapa miR161-3p 14 27
mmu-miR-6917-3p MIMAT0027735 Mus musculus miR-6917-3p 14 27
osa-miR5504 MIMAT0022137 Oryza sativa miR5504 14 27
cin-miR-4001a-1-3p MIMAT0016445 Ciona intestinalis miR-4001a-1-3p 14 27
sja-miR-3485-5p MIMAT0016290 Schistosoma japonicum miR-3485-5p 14 27
aly-miR161-3p.2 MIMAT0017444 Arabidopsis lyrata miR161-3p.2 14 27
gga-miR-1627-5p MIMAT0007497 Gallus gallus miR-1627-5p 14 27
>hcmv-miR-UL112-3p MIMAT0001577 Human cytomegalovirus
miR-UL112-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aagtgacg 8
||||||||
Sbjct: 1 aagtgacg 8
>bra-miR161-3p MIMAT0035879 Brassica rapa miR161-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagtgac 7
|||||||
Sbjct: 7 aagtgac 1
>mmu-miR-6917-3p MIMAT0027735 Mus musculus miR-6917-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagtgac 7
|||||||
Sbjct: 7 aagtgac 1
>osa-miR5504 MIMAT0022137 Oryza sativa miR5504
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgacg 8
|||||||
Sbjct: 1 agtgacg 7
>cin-miR-4001a-1-3p MIMAT0016445 Ciona intestinalis
miR-4001a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagtgac 7
|||||||
Sbjct: 7 aagtgac 1
>sja-miR-3485-5p MIMAT0016290 Schistosoma japonicum miR-3485-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtgacg 8
|||||||
Sbjct: 8 agtgacg 2
>aly-miR161-3p.2 MIMAT0017444 Arabidopsis lyrata miR161-3p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagtgac 7
|||||||
Sbjct: 7 aagtgac 1
>gga-miR-1627-5p MIMAT0007497 Gallus gallus miR-1627-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagtgac 7
|||||||
Sbjct: 2 aagtgac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 130
Number of extensions: 121
Number of successful extensions: 78
Number of sequences better than 100.0: 8
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
