BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b6
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-290b-3p MIMAT0029901 Mus musculus miR-290b-3p                  16   6.9  
hsa-miR-371b-3p MIMAT0019893 Homo sapiens miR-371b-3p                  16   6.9  
bhv1-miR-B6-5p MIMAT0013967 Bovine herpesvirus miR-B6-5p               16   6.9  
ggo-miR-519e-3p MIMAT0036408 Gorilla gorilla miR-519e-3p               14      27
ocu-miR-512b-3p MIMAT0036334 Oryctolagus cuniculus miR-512b-3p         14      27
ocu-miR-512a-3p MIMAT0036332 Oryctolagus cuniculus miR-512a-3p         14      27
stu-miR3627-3p MIMAT0031246 Solanum tuberosum miR3627-3p               14      27
mdo-miR-1545c-5p MIMAT0028752 Monodelphis domestica miR-1545c-5p       14      27
mmu-miR-7222-5p MIMAT0028412 Mus musculus miR-7222-5p                  14      27
gga-miR-6578-3p MIMAT0025664 Gallus gallus miR-6578-3p                 14      27
bdi-miR5181a-3p MIMAT0027085 Brachypodium distachyon miR5181a-3p       14      27
ppy-miR-519e MIMAT0015965 Pongo pygmaeus miR-519e                      14      27
ppy-miR-371-3p MIMAT0015859 Pongo pygmaeus miR-371-3p                  14      27
eca-miR-371-3p MIMAT0013014 Equus caballus miR-371-3p                  14      27
dme-miR-2495-5p MIMAT0012204 Drosophila melanogaster miR-2495-5p       14      27
bta-miR-2349 MIMAT0011884 Bos taurus miR-2349                          14      27
bta-miR-371 MIMAT0009301 Bos taurus miR-371                            14      27
ptr-miR-519e MIMAT0008196 Pan troglodytes miR-519e                     14      27
ptr-miR-371 MIMAT0008121 Pan troglodytes miR-371                       14      27
mml-miR-371-3p MIMAT0006297 Macaca mulatta miR-371-3p                  14      27
gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585                       14      27
oan-miR-1420b-3p MIMAT0006925 Ornithorhynchus anatinus miR-1420b-3p    14      27
hsa-miR-519e-3p MIMAT0002829 Homo sapiens miR-519e-3p                  14      27
mmu-miR-467a-5p MIMAT0003409 Mus musculus miR-467a-5p                  14      27
rno-miR-292-3p MIMAT0000897 Rattus norvegicus miR-292-3p               14      27
hsa-miR-371a-3p MIMAT0000723 Homo sapiens miR-371a-3p                  14      27
mmu-miR-292a-3p MIMAT0000370 Mus musculus miR-292a-3p                  14      27
mmu-miR-290a-3p MIMAT0004572 Mus musculus miR-290a-3p                  14      27
>mmu-miR-290b-3p MIMAT0029901 Mus musculus miR-290b-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aagtgccc 8
         ||||||||
Sbjct: 1 aagtgccc 8
>hsa-miR-371b-3p MIMAT0019893 Homo sapiens miR-371b-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aagtgccc 8
         ||||||||
Sbjct: 1 aagtgccc 8
>bhv1-miR-B6-5p MIMAT0013967 Bovine herpesvirus miR-B6-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aagtgccc 8
         ||||||||
Sbjct: 1 aagtgccc 8
>ggo-miR-519e-3p MIMAT0036408 Gorilla gorilla miR-519e-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>ocu-miR-512b-3p MIMAT0036334 Oryctolagus cuniculus miR-512b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>ocu-miR-512a-3p MIMAT0036332 Oryctolagus cuniculus miR-512a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>stu-miR3627-3p MIMAT0031246 Solanum tuberosum miR3627-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>mdo-miR-1545c-5p MIMAT0028752 Monodelphis domestica
         miR-1545c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgccc 8
         |||||||
Sbjct: 1 agtgccc 7
>mmu-miR-7222-5p MIMAT0028412 Mus musculus miR-7222-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 7 aagtgcc 1
>gga-miR-6578-3p MIMAT0025664 Gallus gallus miR-6578-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agtgccc 8
         |||||||
Sbjct: 7 agtgccc 1
>bdi-miR5181a-3p MIMAT0027085 Brachypodium distachyon
         miR5181a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 8 aagtgcc 2
>ppy-miR-519e MIMAT0015965 Pongo pygmaeus miR-519e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>ppy-miR-371-3p MIMAT0015859 Pongo pygmaeus miR-371-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>eca-miR-371-3p MIMAT0013014 Equus caballus miR-371-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>dme-miR-2495-5p MIMAT0012204 Drosophila melanogaster
         miR-2495-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 8 aagtgcc 2
>bta-miR-2349 MIMAT0011884 Bos taurus miR-2349
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 8 aagtgcc 2
>bta-miR-371 MIMAT0009301 Bos taurus miR-371
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>ptr-miR-519e MIMAT0008196 Pan troglodytes miR-519e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>ptr-miR-371 MIMAT0008121 Pan troglodytes miR-371
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>mml-miR-371-3p MIMAT0006297 Macaca mulatta miR-371-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agtgccc 8
         |||||||
Sbjct: 1 agtgccc 7
>oan-miR-1420b-3p MIMAT0006925 Ornithorhynchus anatinus
         miR-1420b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 2 aagtgcc 8
>hsa-miR-519e-3p MIMAT0002829 Homo sapiens miR-519e-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>mmu-miR-467a-5p MIMAT0003409 Mus musculus miR-467a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 2 aagtgcc 8
>rno-miR-292-3p MIMAT0000897 Rattus norvegicus miR-292-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>hsa-miR-371a-3p MIMAT0000723 Homo sapiens miR-371a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 1 aagtgcc 7
>mmu-miR-292a-3p MIMAT0000370 Mus musculus miR-292a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 2 aagtgcc 8
>mmu-miR-290a-3p MIMAT0004572 Mus musculus miR-290a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aagtgcc 7
         |||||||
Sbjct: 2 aagtgcc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 439
Number of extensions: 408
Number of successful extensions: 247
Number of sequences better than 100.0: 28
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)