BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvav-miR-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9003 MIMAT0034543 Equus caballus miR-9003 14 27
mmu-miR-6949-5p MIMAT0027798 Mus musculus miR-6949-5p 14 27
pma-miR-4552 MIMAT0019584 Petromyzon marinus miR-4552 14 27
mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p 14 27
cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans miR-1832b-3p 14 27
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-... 14 27
>eca-miR-9003 MIMAT0034543 Equus caballus miR-9003
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agtgggc 8
|||||||
Sbjct: 7 agtgggc 1
>mmu-miR-6949-5p MIMAT0027798 Mus musculus miR-6949-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aagtggg 7
|||||||
Sbjct: 2 aagtggg 8
>pma-miR-4552 MIMAT0019584 Petromyzon marinus miR-4552
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aagtggg 7
|||||||
Sbjct: 8 aagtggg 2
>mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgggc 8
|||||||
Sbjct: 2 agtgggc 8
>cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans
miR-1832b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgggc 8
|||||||
Sbjct: 1 agtgggc 7
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
miR-rL1-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agtgggc 8
|||||||
Sbjct: 1 agtgggc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 145
Number of successful extensions: 125
Number of sequences better than 100.0: 6
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
