BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-3rc-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p           14      20
hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p                      14      20
mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica miR-7386j-3p       14      20
gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731                   12      80
ppc-miR-8364k-5p MIMAT0033028 Pristionchus pacificus miR-8364k-5p      12      80
ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p                   12      80
cpa-miR8145 MIMAT0031842 Carica papaya miR8145                         12      80
stu-miR8011a-3p MIMAT0030907 Solanum tuberosum miR8011a-3p             12      80
prd-miR-7952-3p MIMAT0030779 Panagrellus redivivus miR-7952-3p         12      80
mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica miR-7386e-3p       12      80
mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p                12      80
tgu-miR-1460 MIMAT0025398 Taeniopygia guttata miR-1460                 12      80
mmu-miR-21b MIMAT0025121 Mus musculus miR-21b                          12      80
cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p              12      80
hsa-miR-5590-3p MIMAT0022300 Homo sapiens miR-5590-3p                  12      80
tca-miR-3876-5p MIMAT0018844 Tribolium castaneum miR-3876-5p           12      80
cin-miR-4191-5p MIMAT0016809 Ciona intestinalis miR-4191-5p            12      80
bmo-miR-3372-5p MIMAT0015559 Bombyx mori miR-3372-5p                   12      80
aae-miR-2940-5p MIMAT0014283 Aedes aegypti miR-2940-5p                 12      80
mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677                   12      80
mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634                   12      80
ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077                 12      80
mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p                    12      80
gma-miR1533 MIMAT0007396 Glycine max miR1533                           12      80
gma-miR1522 MIMAT0007383 Glycine max miR1522                           12      80
gga-miR-1460 MIMAT0007338 Gallus gallus miR-1460                       12      80
mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p                    12      80
rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p               12      80
hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p                      12      80
>pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aataaac 7
         |||||||
Sbjct: 8 aataaac 2
>hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aataaac 7
         |||||||
Sbjct: 2 aataaac 8
>mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica
         miR-7386j-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aataaac 7
         |||||||
Sbjct: 1 aataaac 7
>gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 3 ataaac 8
>ppc-miR-8364k-5p MIMAT0033028 Pristionchus pacificus
         miR-8364k-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 8 aataaa 3
>ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 8 ataaac 3
>cpa-miR8145 MIMAT0031842 Carica papaya miR8145
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 1 ataaac 6
>stu-miR8011a-3p MIMAT0030907 Solanum tuberosum miR8011a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 1 aataaa 6
>prd-miR-7952-3p MIMAT0030779 Panagrellus redivivus miR-7952-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 3 aataaa 8
>mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica
         miR-7386e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 1 ataaac 6
>mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 1 ataaac 6
>tgu-miR-1460 MIMAT0025398 Taeniopygia guttata miR-1460
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 8 aataaa 3
>mmu-miR-21b MIMAT0025121 Mus musculus miR-21b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 8 ataaac 3
>cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>hsa-miR-5590-3p MIMAT0022300 Homo sapiens miR-5590-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 1 aataaa 6
>tca-miR-3876-5p MIMAT0018844 Tribolium castaneum miR-3876-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 8 aataaa 3
>cin-miR-4191-5p MIMAT0016809 Ciona intestinalis miR-4191-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 8 ataaac 3
>bmo-miR-3372-5p MIMAT0015559 Bombyx mori miR-3372-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>aae-miR-2940-5p MIMAT0014283 Aedes aegypti miR-2940-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 8 ataaac 3
>mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ataaac 7
         ||||||
Sbjct: 3 ataaac 8
>mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 3 aataaa 8
>gma-miR1533 MIMAT0007396 Glycine max miR1533
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 3 aataaa 8
>gma-miR1522 MIMAT0007383 Glycine max miR1522
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>gga-miR-1460 MIMAT0007338 Gallus gallus miR-1460
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 8 aataaa 3
>mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 6 aataaa 1
>hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aataaa 6
         ||||||
Sbjct: 3 aataaa 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 37
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)