BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-3rc-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p 14 20
hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p 14 20
mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica miR-7386j-3p 14 20
gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731 12 80
ppc-miR-8364k-5p MIMAT0033028 Pristionchus pacificus miR-8364k-5p 12 80
ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p 12 80
cpa-miR8145 MIMAT0031842 Carica papaya miR8145 12 80
stu-miR8011a-3p MIMAT0030907 Solanum tuberosum miR8011a-3p 12 80
prd-miR-7952-3p MIMAT0030779 Panagrellus redivivus miR-7952-3p 12 80
mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica miR-7386e-3p 12 80
mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p 12 80
tgu-miR-1460 MIMAT0025398 Taeniopygia guttata miR-1460 12 80
mmu-miR-21b MIMAT0025121 Mus musculus miR-21b 12 80
cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p 12 80
hsa-miR-5590-3p MIMAT0022300 Homo sapiens miR-5590-3p 12 80
tca-miR-3876-5p MIMAT0018844 Tribolium castaneum miR-3876-5p 12 80
cin-miR-4191-5p MIMAT0016809 Ciona intestinalis miR-4191-5p 12 80
bmo-miR-3372-5p MIMAT0015559 Bombyx mori miR-3372-5p 12 80
aae-miR-2940-5p MIMAT0014283 Aedes aegypti miR-2940-5p 12 80
mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677 12 80
mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634 12 80
ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077 12 80
mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p 12 80
gma-miR1533 MIMAT0007396 Glycine max miR1533 12 80
gma-miR1522 MIMAT0007383 Glycine max miR1522 12 80
gga-miR-1460 MIMAT0007338 Gallus gallus miR-1460 12 80
mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p 12 80
rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p 12 80
hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p 12 80
>pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aataaac 7
|||||||
Sbjct: 8 aataaac 2
>hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aataaac 7
|||||||
Sbjct: 2 aataaac 8
>mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica
miR-7386j-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aataaac 7
|||||||
Sbjct: 1 aataaac 7
>gra-miR8731 MIMAT0034131 Gossypium raimondii miR8731
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ataaac 7
||||||
Sbjct: 3 ataaac 8
>ppc-miR-8364k-5p MIMAT0033028 Pristionchus pacificus
miR-8364k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 8 aataaa 3
>ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ataaac 7
||||||
Sbjct: 8 ataaac 3
>cpa-miR8145 MIMAT0031842 Carica papaya miR8145
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ataaac 7
||||||
Sbjct: 1 ataaac 6
>stu-miR8011a-3p MIMAT0030907 Solanum tuberosum miR8011a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 1 aataaa 6
>prd-miR-7952-3p MIMAT0030779 Panagrellus redivivus miR-7952-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 3 aataaa 8
>mdo-miR-7386e-3p MIMAT0028853 Monodelphis domestica
miR-7386e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ataaac 7
||||||
Sbjct: 1 ataaac 6
>mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ataaac 7
||||||
Sbjct: 1 ataaac 6
>tgu-miR-1460 MIMAT0025398 Taeniopygia guttata miR-1460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 8 aataaa 3
>mmu-miR-21b MIMAT0025121 Mus musculus miR-21b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ataaac 7
||||||
Sbjct: 8 ataaac 3
>cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>hsa-miR-5590-3p MIMAT0022300 Homo sapiens miR-5590-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 1 aataaa 6
>tca-miR-3876-5p MIMAT0018844 Tribolium castaneum miR-3876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 8 aataaa 3
>cin-miR-4191-5p MIMAT0016809 Ciona intestinalis miR-4191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ataaac 7
||||||
Sbjct: 8 ataaac 3
>bmo-miR-3372-5p MIMAT0015559 Bombyx mori miR-3372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>aae-miR-2940-5p MIMAT0014283 Aedes aegypti miR-2940-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ataaac 7
||||||
Sbjct: 8 ataaac 3
>mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>ppt-miR2077 MIMAT0010014 Physcomitrella patens miR2077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ataaac 7
||||||
Sbjct: 3 ataaac 8
>mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 3 aataaa 8
>gma-miR1533 MIMAT0007396 Glycine max miR1533
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 3 aataaa 8
>gma-miR1522 MIMAT0007383 Glycine max miR1522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>gga-miR-1460 MIMAT0007338 Gallus gallus miR-1460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 8 aataaa 3
>mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aataaa 6
||||||
Sbjct: 6 aataaa 1
>hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aataaa 6
||||||
Sbjct: 3 aataaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 37
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)