BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s11
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

nve-miR-9453 MIMAT0035414 Nematostella vectensis miR-9453              14      20
ata-miR390-3p MIMAT0037141 Aegilops tauschii miR390-3p                 12      80
oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p          12      80
sly-miR390b-3p MIMAT0035480 Solanum lycopersicum miR390b-3p            12      80
sly-miR390a-3p MIMAT0035468 Solanum lycopersicum miR390a-3p            12      80
gsa-miR-31-3p MIMAT0035315 Gyrodactylus salaris miR-31-3p              12      80
sma-miR-8465-5p MIMAT0033649 Schistosoma mansoni miR-8465-5p           12      80
ppc-miR-8347-5p MIMAT0033242 Pristionchus pacificus miR-8347-5p        12      80
ppc-miR-8248-3p MIMAT0032961 Pristionchus pacificus miR-8248-3p        12      80
ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p                     12      80
stu-miR390-3p MIMAT0031344 Solanum tuberosum miR390-3p                 12      80
bdi-miR7717c-5p MIMAT0030204 Brachypodium distachyon miR7717c-5p       12      80
hsa-miR-7705 MIMAT0030020 Homo sapiens miR-7705                        12      80
lja-miR390b-3p MIMAT0029325 Lotus japonicus miR390b-3p                 12      80
lja-miR390a-3p MIMAT0029323 Lotus japonicus miR390a-3p                 12      80
mes-miR390 MIMAT0029261 Manihot esculenta miR390                       12      80
hco-miR-5891 MIMAT0023328 Haemonchus contortus miR-5891                12      80
ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628                  12      80
aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p         12      80
bdi-miR390a-3p MIMAT0027043 Brachypodium distachyon miR390a-3p         12      80
gma-miR390c MIMAT0020995 Glycine max miR390c                           12      80
cin-miR-4030-3p MIMAT0016550 Ciona intestinalis miR-4030-3p            12      80
cin-miR-4006b-3p MIMAT0016473 Ciona intestinalis miR-4006b-3p          12      80
aly-miR390b-3p MIMAT0017536 Arabidopsis lyrata miR390b-3p              12      80
aly-miR390a-3p MIMAT0017534 Arabidopsis lyrata miR390a-3p              12      80
tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p         12      80
zma-miR390b-3p MIMAT0015367 Zea mays miR390b-3p                        12      80
zma-miR390a-3p MIMAT0015333 Zea mays miR390a-3p                        12      80
hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p                  12      80
dps-miR-2520 MIMAT0012308 Drosophila pseudoobscura miR-2520            12      80
nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p        12      80
dvi-miR-31a-3p MIMAT0032087 Drosophila virilis miR-31a-3p              12      80
gma-miR390a-3p MIMAT0007360 Glycine max miR390a-3p                     12      80
oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p        12      80
sme-miR-31b-1-3p MIMAT0011413 Schmidtea mediterranea miR-31b-1-3p      12      80
ptc-miR390d-3p MIMAT0022907 Populus trichocarpa miR390d-3p             12      80
dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p                     12      80
osa-miR390-3p MIMAT0022888 Oryza sativa miR390-3p                      12      80
ath-miR390b-3p MIMAT0031903 Arabidopsis thaliana miR390b-3p            12      80
ath-miR390a-3p MIMAT0031902 Arabidopsis thaliana miR390a-3p            12      80
rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p           12      80
hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p                12      80
dme-miR-31a-3p MIMAT0020834 Drosophila melanogaster miR-31a-3p         12      80
cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p          12      80
mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p                12      80
>nve-miR-9453 MIMAT0035414 Nematostella vectensis miR-9453
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatagcg 7
         |||||||
Sbjct: 8 aatagcg 2
>ata-miR390-3p MIMAT0037141 Aegilops tauschii miR390-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>sly-miR390b-3p MIMAT0035480 Solanum lycopersicum miR390b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>sly-miR390a-3p MIMAT0035468 Solanum lycopersicum miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>gsa-miR-31-3p MIMAT0035315 Gyrodactylus salaris miR-31-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>sma-miR-8465-5p MIMAT0033649 Schistosoma mansoni miR-8465-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 3 aatagc 8
>ppc-miR-8347-5p MIMAT0033242 Pristionchus pacificus miR-8347-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 8 aatagc 3
>ppc-miR-8248-3p MIMAT0032961 Pristionchus pacificus miR-8248-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 1 aatagc 6
>ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>stu-miR390-3p MIMAT0031344 Solanum tuberosum miR390-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>bdi-miR7717c-5p MIMAT0030204 Brachypodium distachyon
         miR7717c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 8 aatagc 3
>hsa-miR-7705 MIMAT0030020 Homo sapiens miR-7705
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 1 aatagc 6
>lja-miR390b-3p MIMAT0029325 Lotus japonicus miR390b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>lja-miR390a-3p MIMAT0029323 Lotus japonicus miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>mes-miR390 MIMAT0029261 Manihot esculenta miR390
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>hco-miR-5891 MIMAT0023328 Haemonchus contortus miR-5891
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 1 atagcg 6
>ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 3 aatagc 8
>aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>bdi-miR390a-3p MIMAT0027043 Brachypodium distachyon miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>gma-miR390c MIMAT0020995 Glycine max miR390c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>cin-miR-4030-3p MIMAT0016550 Ciona intestinalis miR-4030-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>cin-miR-4006b-3p MIMAT0016473 Ciona intestinalis miR-4006b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>aly-miR390b-3p MIMAT0017536 Arabidopsis lyrata miR390b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>aly-miR390a-3p MIMAT0017534 Arabidopsis lyrata miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>zma-miR390b-3p MIMAT0015367 Zea mays miR390b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>zma-miR390a-3p MIMAT0015333 Zea mays miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 3 aatagc 8
>dps-miR-2520 MIMAT0012308 Drosophila pseudoobscura miR-2520
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 1 aatagc 6
>nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 3 aatagc 8
>dvi-miR-31a-3p MIMAT0032087 Drosophila virilis miR-31a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>gma-miR390a-3p MIMAT0007360 Glycine max miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>sme-miR-31b-1-3p MIMAT0011413 Schmidtea mediterranea
         miR-31b-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 8 aatagc 3
>ptc-miR390d-3p MIMAT0022907 Populus trichocarpa miR390d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>osa-miR390-3p MIMAT0022888 Oryza sativa miR390-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>ath-miR390b-3p MIMAT0031903 Arabidopsis thaliana miR390b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>ath-miR390a-3p MIMAT0031902 Arabidopsis thaliana miR390a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>dme-miR-31a-3p MIMAT0020834 Drosophila melanogaster miR-31a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atagcg 7
         ||||||
Sbjct: 6 atagcg 1
>cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
>mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 aatagc 6
         ||||||
Sbjct: 6 aatagc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 54
Number of extensions: 53
Number of successful extensions: 45
Number of sequences better than 100.0: 45
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 45
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)