BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s13
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

chi-miR-410-3p MIMAT0036212 Capra hircus miR-410-3p                    14      27
tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p             14      27
mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica miR-7374a-3p       14      27
mdo-miR-7333-5p MIMAT0028674 Monodelphis domestica miR-7333-5p         14      27
ggo-miR-410 MIMAT0024121 Gorilla gorilla miR-410                       14      27
cgr-miR-410-3p MIMAT0023953 Cricetulus griseus miR-410-3p              14      27
oar-miR-410-3p MIMAT0019334 Ovis aries miR-410-3p                      14      27
cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p            14      27
ppy-miR-410 MIMAT0015877 Pongo pygmaeus miR-410                        14      27
aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p              14      27
eca-miR-410 MIMAT0013153 Equus caballus miR-410                        14      27
sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p        14      27
ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p            14      27
bta-miR-410 MIMAT0009311 Bos taurus miR-410                            14      27
ptr-miR-410 MIMAT0008137 Pan troglodytes miR-410                       14      27
cfa-miR-410 MIMAT0006728 Canis familiaris miR-410                      14      27
mml-miR-410-3p MIMAT0006316 Macaca mulatta miR-410-3p                  14      27
rno-miR-410-3p MIMAT0005311 Rattus norvegicus miR-410-3p               14      27
hsa-miR-410-3p MIMAT0002171 Homo sapiens miR-410-3p                    14      27
mmu-miR-410-3p MIMAT0001091 Mus musculus miR-410-3p                    14      27
>chi-miR-410-3p MIMAT0036212 Capra hircus miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 2 aatataa 8
>mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica
         miR-7374a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 2 aatataa 8
>mdo-miR-7333-5p MIMAT0028674 Monodelphis domestica miR-7333-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 8 aatataa 2
>ggo-miR-410 MIMAT0024121 Gorilla gorilla miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>cgr-miR-410-3p MIMAT0023953 Cricetulus griseus miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>oar-miR-410-3p MIMAT0019334 Ovis aries miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 2 aatataa 8
>ppy-miR-410 MIMAT0015877 Pongo pygmaeus miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atataaa 8
         |||||||
Sbjct: 8 atataaa 2
>eca-miR-410 MIMAT0013153 Equus caballus miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 7 aatataa 1
>ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atataaa 8
         |||||||
Sbjct: 8 atataaa 2
>bta-miR-410 MIMAT0009311 Bos taurus miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>ptr-miR-410 MIMAT0008137 Pan troglodytes miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>cfa-miR-410 MIMAT0006728 Canis familiaris miR-410
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>mml-miR-410-3p MIMAT0006316 Macaca mulatta miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>rno-miR-410-3p MIMAT0005311 Rattus norvegicus miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>hsa-miR-410-3p MIMAT0002171 Homo sapiens miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
>mmu-miR-410-3p MIMAT0001091 Mus musculus miR-410-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatataa 7
         |||||||
Sbjct: 1 aatataa 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 99
Number of successful extensions: 69
Number of sequences better than 100.0: 20
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)