BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s43
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308 16 6.9
chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p 14 27
nve-miR-9440 MIMAT0035401 Nematostella vectensis miR-9440 14 27
efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b 14 27
ppe-miR8131-3p MIMAT0031559 Prunus persica miR8131-3p 14 27
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p 14 27
ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421 14 27
ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p 14 27
tca-miR-3851f-5p MIMAT0018784 Tribolium castaneum miR-3851f-5p 14 27
tca-miR-3851e-5p MIMAT0018780 Tribolium castaneum miR-3851e-5p 14 27
tca-miR-3851c-5p MIMAT0018772 Tribolium castaneum miR-3851c-5p 14 27
tca-miR-3851a-5p MIMAT0018758 Tribolium castaneum miR-3851a-5p 14 27
tca-miR-3851b-5p MIMAT0018756 Tribolium castaneum miR-3851b-5p 14 27
ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p 14 27
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244 14 27
cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p 14 27
ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421 14 27
dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p 14 27
dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p 14 27
bta-miR-2488 MIMAT0012084 Bos taurus miR-2488 14 27
bta-miR-421 MIMAT0009314 Bos taurus miR-421 14 27
ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421 14 27
cfa-miR-421 MIMAT0006755 Canis familiaris miR-421 14 27
mml-miR-421 MIMAT0006319 Macaca mulatta miR-421 14 27
dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p 14 27
mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p 14 27
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p 14 27
hsa-miR-421 MIMAT0003339 Homo sapiens miR-421 14 27
rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p 14 27
>efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aatcaaca 8
||||||||
Sbjct: 8 aatcaaca 1
>chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>nve-miR-9440 MIMAT0035401 Nematostella vectensis miR-9440
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatcaac 7
|||||||
Sbjct: 2 aatcaac 8
>efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcaaca 8
|||||||
Sbjct: 7 atcaaca 1
>ppe-miR8131-3p MIMAT0031559 Prunus persica miR8131-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatcaac 7
|||||||
Sbjct: 1 aatcaac 7
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>tca-miR-3851f-5p MIMAT0018784 Tribolium castaneum miR-3851f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcaac 7
|||||||
Sbjct: 8 aatcaac 2
>tca-miR-3851e-5p MIMAT0018780 Tribolium castaneum miR-3851e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcaac 7
|||||||
Sbjct: 8 aatcaac 2
>tca-miR-3851c-5p MIMAT0018772 Tribolium castaneum miR-3851c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcaac 7
|||||||
Sbjct: 8 aatcaac 2
>tca-miR-3851a-5p MIMAT0018758 Tribolium castaneum miR-3851a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcaac 7
|||||||
Sbjct: 8 aatcaac 2
>tca-miR-3851b-5p MIMAT0018756 Tribolium castaneum miR-3851b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatcaac 7
|||||||
Sbjct: 8 aatcaac 2
>ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcaaca 8
|||||||
Sbjct: 8 atcaaca 2
>cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcaaca 8
|||||||
Sbjct: 8 atcaaca 2
>ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 2 atcaaca 8
>dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 2 atcaaca 8
>bta-miR-2488 MIMAT0012084 Bos taurus miR-2488
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atcaaca 8
|||||||
Sbjct: 8 atcaaca 2
>bta-miR-421 MIMAT0009314 Bos taurus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>cfa-miR-421 MIMAT0006755 Canis familiaris miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>mml-miR-421 MIMAT0006319 Macaca mulatta miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>hsa-miR-421 MIMAT0003339 Homo sapiens miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
>rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atcaaca 8
|||||||
Sbjct: 1 atcaaca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 223
Number of extensions: 193
Number of successful extensions: 166
Number of sequences better than 100.0: 29
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 29
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)