BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-73-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-216b MIMAT0036063 Capra hircus miR-216b 14 20
ssa-miR-216a-5p MIMAT0032516 Salmo salar miR-216a-5p 14 20
ipu-miR-216b MIMAT0029468 Ictalurus punctatus miR-216b 14 20
gga-miR-7473-5p MIMAT0029100 Gallus gallus miR-7473-5p 14 20
oan-miR-216b-5p MIMAT0029020 Ornithorhynchus anatinus miR-216b-5p 14 20
ptc-miR6457a MIMAT0025267 Populus trichocarpa miR6457a 14 20
mtr-miR5757 MIMAT0023141 Medicago truncatula miR5757 14 20
sha-miR-216b MIMAT0022776 Sarcophilus harrisii miR-216b 14 20
aca-miR-216b-5p MIMAT0021876 Anolis carolinensis miR-216b-5p 14 20
hsa-miR-5186 MIMAT0021116 Homo sapiens miR-5186 14 20
pma-miR-216b MIMAT0019527 Petromyzon marinus miR-216b 14 20
pab-miR3702 MIMAT0018134 Picea abies miR3702 14 20
rno-miR-216b-5p MIMAT0017846 Rattus norvegicus miR-216b-5p 14 20
ppy-miR-216b MIMAT0015802 Pongo pygmaeus miR-216b 14 20
tgu-miR-216b-5p MIMAT0014593 Taeniopygia guttata miR-216b-5p 14 20
bmo-miR-2833b MIMAT0013791 Bombyx mori miR-2833b 14 20
eca-miR-216b MIMAT0013073 Equus caballus miR-216b 14 20
bmo-miR-2833 MIMAT0013747 Bombyx mori miR-2833 14 20
bta-miR-216b MIMAT0009266 Bos taurus miR-216b 14 20
ptr-miR-216b MIMAT0008072 Pan troglodytes miR-216b 14 20
gga-miR-216b MIMAT0007748 Gallus gallus miR-216b 14 20
cfa-miR-216b MIMAT0006592 Canis familiaris miR-216b 14 20
mml-miR-216b MIMAT0006243 Macaca mulatta miR-216b 14 20
csa-miR-216b MIMAT0006135 Ciona savignyi miR-216b 14 20
ppt-miR1058 MIMAT0005176 Physcomitrella patens miR1058 14 20
hsa-miR-216b-5p MIMAT0004959 Homo sapiens miR-216b-5p 14 20
mmu-miR-216b-5p MIMAT0003729 Mus musculus miR-216b-5p 14 20
tni-miR-216b MIMAT0002976 Tetraodon nigroviridis miR-216b 14 20
fru-miR-216b MIMAT0002975 Fugu rubripes miR-216b 14 20
dre-miR-216b MIMAT0001867 Danio rerio miR-216b 14 20
gma-miR9724 MIMAT0036339 Glycine max miR9724 12 80
bra-miR9558-5p MIMAT0035669 Brassica rapa miR9558-5p 12 80
ppc-miR-8336-3p MIMAT0033219 Pristionchus pacificus miR-8336-3p 12 80
ppc-miR-8214-5p MIMAT0032858 Pristionchus pacificus miR-8214-5p 12 80
ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p 12 80
prd-miR-7914-5p MIMAT0030658 Panagrellus redivivus miR-7914-5p 12 80
rgl-miR7807b-3p MIMAT0032259 Rehmannia glutinosa miR7807b-3p 12 80
cbn-miR-58b MIMAT0029695 Caenorhabditis brenneri miR-58b 12 80
crm-miR-58d MIMAT0029638 Caenorhabditis remanei miR-58d 12 80
gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p 12 80
gga-miR-6620-5p MIMAT0025716 Gallus gallus miR-6620-5p 12 80
hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088 12 80
hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p 12 80
hsa-miR-4708-5p MIMAT0019809 Homo sapiens miR-4708-5p 12 80
ppy-miR-513a-1-3p MIMAT0015939 Pongo pygmaeus miR-513a-1-3p 12 80
aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p 12 80
bmo-miR-3417 MIMAT0015624 Bombyx mori miR-3417 12 80
eca-miR-1461 MIMAT0013071 Equus caballus miR-1461 12 80
hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8 12 80
dsi-miR-967-5p MIMAT0012437 Drosophila simulans miR-967-5p 12 80
cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans miR-2209b-3p 12 80
cel-miR-2209a-3p MIMAT0011432 Caenorhabditis elegans miR-2209a-3p 12 80
osa-miR2097-5p MIMAT0010058 Oryza sativa miR2097-5p 12 80
cel-miR-58b-3p MIMAT0006776 Caenorhabditis elegans miR-58b-3p 12 80
gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721 12 80
gga-miR-1667-5p MIMAT0026778 Gallus gallus miR-1667-5p 12 80
gga-miR-1560-3p MIMAT0007418 Gallus gallus miR-1560-3p 12 80
gga-miR-216c MIMAT0007339 Gallus gallus miR-216c 12 80
cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018 12 80
dme-miR-967-5p MIMAT0005482 Drosophila melanogaster miR-967-5p 12 80
ath-miR831-3p MIMAT0004249 Arabidopsis thaliana miR831-3p 12 80
mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p 12 80
sme-miR-755-3p MIMAT0012126 Schmidtea mediterranea miR-755-3p 12 80
mmu-miR-692 MIMAT0003471 Mus musculus miR-692 12 80
>chi-miR-216b MIMAT0036063 Capra hircus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ssa-miR-216a-5p MIMAT0032516 Salmo salar miR-216a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ipu-miR-216b MIMAT0029468 Ictalurus punctatus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>gga-miR-7473-5p MIMAT0029100 Gallus gallus miR-7473-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 8 aatctct 2
>oan-miR-216b-5p MIMAT0029020 Ornithorhynchus anatinus
miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ptc-miR6457a MIMAT0025267 Populus trichocarpa miR6457a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>mtr-miR5757 MIMAT0023141 Medicago truncatula miR5757
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 8 aatctct 2
>sha-miR-216b MIMAT0022776 Sarcophilus harrisii miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>aca-miR-216b-5p MIMAT0021876 Anolis carolinensis miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>hsa-miR-5186 MIMAT0021116 Homo sapiens miR-5186
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 7 aatctct 1
>pma-miR-216b MIMAT0019527 Petromyzon marinus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>pab-miR3702 MIMAT0018134 Picea abies miR3702
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 1 aatctct 7
>rno-miR-216b-5p MIMAT0017846 Rattus norvegicus miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ppy-miR-216b MIMAT0015802 Pongo pygmaeus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>tgu-miR-216b-5p MIMAT0014593 Taeniopygia guttata miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>bmo-miR-2833b MIMAT0013791 Bombyx mori miR-2833b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 7 aatctct 1
>eca-miR-216b MIMAT0013073 Equus caballus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>bmo-miR-2833 MIMAT0013747 Bombyx mori miR-2833
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 7 aatctct 1
>bta-miR-216b MIMAT0009266 Bos taurus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ptr-miR-216b MIMAT0008072 Pan troglodytes miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>gga-miR-216b MIMAT0007748 Gallus gallus miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>cfa-miR-216b MIMAT0006592 Canis familiaris miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>mml-miR-216b MIMAT0006243 Macaca mulatta miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>csa-miR-216b MIMAT0006135 Ciona savignyi miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>ppt-miR1058 MIMAT0005176 Physcomitrella patens miR1058
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatctct 7
|||||||
Sbjct: 7 aatctct 1
>hsa-miR-216b-5p MIMAT0004959 Homo sapiens miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>mmu-miR-216b-5p MIMAT0003729 Mus musculus miR-216b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>tni-miR-216b MIMAT0002976 Tetraodon nigroviridis miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>fru-miR-216b MIMAT0002975 Fugu rubripes miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>dre-miR-216b MIMAT0001867 Danio rerio miR-216b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatctct 7
|||||||
Sbjct: 2 aatctct 8
>gma-miR9724 MIMAT0036339 Glycine max miR9724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 7 atctct 2
>bra-miR9558-5p MIMAT0035669 Brassica rapa miR9558-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>ppc-miR-8336-3p MIMAT0033219 Pristionchus pacificus miR-8336-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatctc 6
||||||
Sbjct: 8 aatctc 3
>ppc-miR-8214-5p MIMAT0032858 Pristionchus pacificus miR-8214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatctc 6
||||||
Sbjct: 8 aatctc 3
>ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 3 atctct 8
>prd-miR-7914-5p MIMAT0030658 Panagrellus redivivus miR-7914-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 3 atctct 8
>rgl-miR7807b-3p MIMAT0032259 Rehmannia glutinosa miR7807b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatctc 6
||||||
Sbjct: 8 aatctc 3
>cbn-miR-58b MIMAT0029695 Caenorhabditis brenneri miR-58b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>crm-miR-58d MIMAT0029638 Caenorhabditis remanei miR-58d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>gga-miR-6620-5p MIMAT0025716 Gallus gallus miR-6620-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 8 atctct 3
>hsa-miR-4708-5p MIMAT0019809 Homo sapiens miR-4708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>ppy-miR-513a-1-3p MIMAT0015939 Pongo pygmaeus miR-513a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatctc 6
||||||
Sbjct: 3 aatctc 8
>aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatctc 6
||||||
Sbjct: 1 aatctc 6
>bmo-miR-3417 MIMAT0015624 Bombyx mori miR-3417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 7 atctct 2
>eca-miR-1461 MIMAT0013071 Equus caballus miR-1461
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 1 atctct 6
>hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 1 atctct 6
>dsi-miR-967-5p MIMAT0012437 Drosophila simulans miR-967-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans
miR-2209b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>cel-miR-2209a-3p MIMAT0011432 Caenorhabditis elegans
miR-2209a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>osa-miR2097-5p MIMAT0010058 Oryza sativa miR2097-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>cel-miR-58b-3p MIMAT0006776 Caenorhabditis elegans miR-58b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>gga-miR-1667-5p MIMAT0026778 Gallus gallus miR-1667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatctc 6
||||||
Sbjct: 6 aatctc 1
>gga-miR-1560-3p MIMAT0007418 Gallus gallus miR-1560-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 3 atctct 8
>gga-miR-216c MIMAT0007339 Gallus gallus miR-216c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 1 atctct 6
>cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 8 atctct 3
>dme-miR-967-5p MIMAT0005482 Drosophila melanogaster miR-967-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 6 atctct 1
>ath-miR831-3p MIMAT0004249 Arabidopsis thaliana miR831-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 3 atctct 8
>mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atctct 7
||||||
Sbjct: 8 atctct 3
>sme-miR-755-3p MIMAT0012126 Schmidtea mediterranea miR-755-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatctc 6
||||||
Sbjct: 8 aatctc 3
>mmu-miR-692 MIMAT0003471 Mus musculus miR-692
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atctct 7
||||||
Sbjct: 1 atctct 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 189
Number of extensions: 159
Number of successful extensions: 64
Number of sequences better than 100.0: 64
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 64
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
