BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv2-miR-h6
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-miR482d MIMAT0026039 Malus domestica miR482d                       16   6.9  
hsv2-miR-H6-5p MIMAT0015651 Herpes Simplex miR-H6-5p                   16   6.9  
osa-miR2095-3p MIMAT0010055 Oryza sativa miR2095-3p                    16   6.9  
sma-miR-8410-5p MIMAT0033524 Schistosoma mansoni miR-8410-5p           14      27
stu-miR8002-3p MIMAT0031190 Solanum tuberosum miR8002-3p               14      27
bdi-miR7757-5p.2 MIMAT0030259 Brachypodium distachyon miR7757-5p.2     14      27
lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b                     14      27
lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a                     14      27
ddi-miR-7095-5p MIMAT0028097 Dictyostelium discoideum miR-7095-5p      14      27
mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p                  14      27
mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p                  14      27
gma-miR5671a MIMAT0022453 Glycine max miR5671a                         14      27
cin-miR-4145-3p MIMAT0016748 Ciona intestinalis miR-4145-3p            14      27
esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p        14      27
esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p        14      27
esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p        14      27
esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p        14      27
esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p        14      27
pvu-miR159a.2 MIMAT0011170 Phaseolus vulgaris miR159a.2                14      27
mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p                 14      27
hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p                   14      27
ath-miR447a.2-3p MIMAT0020345 Arabidopsis thaliana miR447a.2-3p        14      27
cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p            14      27
>mdm-miR482d MIMAT0026039 Malus domestica miR482d
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aatggaag 8
         ||||||||
Sbjct: 1 aatggaag 8
>hsv2-miR-H6-5p MIMAT0015651 Herpes Simplex miR-H6-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aatggaag 8
         ||||||||
Sbjct: 1 aatggaag 8
>osa-miR2095-3p MIMAT0010055 Oryza sativa miR2095-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 aatggaag 8
         ||||||||
Sbjct: 8 aatggaag 1
>sma-miR-8410-5p MIMAT0033524 Schistosoma mansoni miR-8410-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatggaa 7
         |||||||
Sbjct: 1 aatggaa 7
>stu-miR8002-3p MIMAT0031190 Solanum tuberosum miR8002-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatggaa 7
         |||||||
Sbjct: 8 aatggaa 2
>bdi-miR7757-5p.2 MIMAT0030259 Brachypodium distachyon
         miR7757-5p.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 8 atggaag 2
>lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 8 atggaag 2
>ddi-miR-7095-5p MIMAT0028097 Dictyostelium discoideum
         miR-7095-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 aatggaa 7
         |||||||
Sbjct: 7 aatggaa 1
>mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 8 atggaag 2
>mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 8 atggaag 2
>gma-miR5671a MIMAT0022453 Glycine max miR5671a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>cin-miR-4145-3p MIMAT0016748 Ciona intestinalis miR-4145-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aatggaa 7
         |||||||
Sbjct: 1 aatggaa 7
>esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>pvu-miR159a.2 MIMAT0011170 Phaseolus vulgaris miR159a.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 7 atggaag 1
>mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>ath-miR447a.2-3p MIMAT0020345 Arabidopsis thaliana miR447a.2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 295
Number of extensions: 269
Number of successful extensions: 242
Number of sequences better than 100.0: 23
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)