BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b 14 20
hbr-miR6484 MIMAT0025293 Hevea brasiliensis miR6484 14 20
pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p 14 20
chi-miR-660 MIMAT0036284 Capra hircus miR-660 12 80
efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660 12 80
gra-miR8715 MIMAT0034105 Gossypium raimondii miR8715 12 80
sma-miR-8482-5p MIMAT0033685 Schistosoma mansoni miR-8482-5p 12 80
str-miR-81b-5p MIMAT0033342 Strongyloides ratti miR-81b-5p 12 80
ppc-miR-8343-3p MIMAT0033232 Pristionchus pacificus miR-8343-3p 12 80
ppc-miR-8317a-5p MIMAT0033089 Pristionchus pacificus miR-8317a-5p 12 80
bma-miR-5363 MIMAT0031754 Brugia malayi miR-5363 12 80
bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p 12 80
prd-miR-5960-3p MIMAT0030465 Panagrellus redivivus miR-5960-3p 12 80
ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821 12 80
mdo-miR-7372-5p MIMAT0028776 Monodelphis domestica miR-7372-5p 12 80
mdo-miR-7304-3p MIMAT0028603 Monodelphis domestica miR-7304-3p 12 80
mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p 12 80
ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p 12 80
ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p 12 80
hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118 12 80
ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660 12 80
hco-miR-5896 MIMAT0023340 Haemonchus contortus miR-5896 12 80
cel-miR-5553-3p MIMAT0022198 Caenorhabditis elegans miR-5553-3p 12 80
asu-miR-5363-5p MIMAT0021588 Ascaris suum miR-5363-5p 12 80
osa-miR5076 MIMAT0020564 Oryza sativa miR5076 12 80
hsa-miR-4641 MIMAT0019701 Homo sapiens miR-4641 12 80
vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p 12 80
ppy-miR-1246 MIMAT0016171 Pongo pygmaeus miR-1246 12 80
ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660 12 80
eca-miR-660 MIMAT0013241 Equus caballus miR-660 12 80
bta-miR-2314 MIMAT0011834 Bos taurus miR-2314 12 80
pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p 12 80
bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p 12 80
ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660 12 80
cfa-miR-660 MIMAT0006760 Canis familiaris miR-660 12 80
mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p 12 80
bta-miR-660 MIMAT0004344 Bos taurus miR-660 12 80
ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p 12 80
hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p 12 80
cel-miR-233-5p MIMAT0020329 Caenorhabditis elegans miR-233-5p 12 80
>hbr-miR482b MIMAT0035237 Hevea brasiliensis miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatgggc 7
|||||||
Sbjct: 2 aatgggc 8
>hbr-miR6484 MIMAT0025293 Hevea brasiliensis miR6484
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatgggc 7
|||||||
Sbjct: 2 aatgggc 8
>pma-miR-4547-3p MIMAT0019579 Petromyzon marinus miR-4547-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatgggc 7
|||||||
Sbjct: 8 aatgggc 2
>chi-miR-660 MIMAT0036284 Capra hircus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>efu-miR-660 MIMAT0035154 Eptesicus fuscus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>gra-miR8715 MIMAT0034105 Gossypium raimondii miR8715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>sma-miR-8482-5p MIMAT0033685 Schistosoma mansoni miR-8482-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 1 aatggg 6
>str-miR-81b-5p MIMAT0033342 Strongyloides ratti miR-81b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>ppc-miR-8343-3p MIMAT0033232 Pristionchus pacificus miR-8343-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>ppc-miR-8317a-5p MIMAT0033089 Pristionchus pacificus
miR-8317a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>bma-miR-5363 MIMAT0031754 Brugia malayi miR-5363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 6 aatggg 1
>prd-miR-5960-3p MIMAT0030465 Panagrellus redivivus miR-5960-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 6 aatggg 1
>ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 3 atgggc 8
>mdo-miR-7372-5p MIMAT0028776 Monodelphis domestica miR-7372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>mdo-miR-7304-3p MIMAT0028603 Monodelphis domestica miR-7304-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 1 aatggg 6
>mmu-miR-6987-3p MIMAT0027877 Mus musculus miR-6987-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>ppe-miR482c-5p MIMAT0027283 Prunus persica miR482c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>ppe-miR482b-5p MIMAT0031166 Prunus persica miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>ggo-miR-660 MIMAT0024164 Gorilla gorilla miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>hco-miR-5896 MIMAT0023340 Haemonchus contortus miR-5896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>cel-miR-5553-3p MIMAT0022198 Caenorhabditis elegans miR-5553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>asu-miR-5363-5p MIMAT0021588 Ascaris suum miR-5363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgggc 7
||||||
Sbjct: 1 atgggc 6
>osa-miR5076 MIMAT0020564 Oryza sativa miR5076
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>hsa-miR-4641 MIMAT0019701 Homo sapiens miR-4641
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgggc 7
||||||
Sbjct: 7 atgggc 2
>vvi-miR3633b-5p MIMAT0018041 Vitis vinifera miR3633b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>ppy-miR-1246 MIMAT0016171 Pongo pygmaeus miR-1246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 1 aatggg 6
>ppy-miR-660 MIMAT0016092 Pongo pygmaeus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>eca-miR-660 MIMAT0013241 Equus caballus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>bta-miR-2314 MIMAT0011834 Bos taurus miR-2314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgggc 7
||||||
Sbjct: 7 atgggc 2
>pvu-miR482-5p MIMAT0011172 Phaseolus vulgaris miR482-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aatggg 6
||||||
Sbjct: 3 aatggg 8
>bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 6 aatggg 1
>ptr-miR-660 MIMAT0008308 Pan troglodytes miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>cfa-miR-660 MIMAT0006760 Canis familiaris miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>mml-miR-660-5p MIMAT0006499 Macaca mulatta miR-660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>bta-miR-660 MIMAT0004344 Bos taurus miR-660
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgggc 7
||||||
Sbjct: 8 atgggc 3
>hsa-miR-660-5p MIMAT0003338 Homo sapiens miR-660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aatggg 6
||||||
Sbjct: 8 aatggg 3
>cel-miR-233-5p MIMAT0020329 Caenorhabditis elegans miR-233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgggc 7
||||||
Sbjct: 8 atgggc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 58
Number of extensions: 55
Number of successful extensions: 40
Number of sequences better than 100.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
